Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002843

Physical Location & Seq

Genomic Coordinates Forward (+)

31868334 .. 31878970

Gene Structure 10637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTTGCATCCTGAAAAGATGAATATGGAACAAGATTCTGAATTTAAGTGGGGTGAAAGGCTTGGAGTTGGTAGGACAAACAAGGATGTCCGGTTCTACCAGTCTTTCACATTTCAGGGCGTGGAGTACTCCCTTTATGATTCCGTACACCTCTACAAGACTGGCGCTTTGGAAACAGATATTGGTAAGATTATCAAAATATATTCCACAGCAACTGAAAAGAAGGTTAGGATTGTGTGGTTTCTTCGGCCAGCTGAAATATGCAACTTTTTGGATGAGTACTTGAAGTTGATATTTTACACAGCTCAGACAGTTGACTTTAAAAGTCCTTATTATAAGGCTGCGGGTGGAACTCTCCCTATATGTGAAGCAATTGTTGGAAAGTGTAATGTTGTCTGCTTATCAAAGGATACAAGGAATCCTCGTCCCTCTAAAGAAGAGTTGAGAACGGCCAACTACAGTTTCCGTTGTACTTTTGATGTTGACAGGCGCAAAATATTGCAGAAGTTTCCTGATCAAATATATGGAATTAAAGTGGAGAAATATTTTAACAGGCGAAAACAGCAAAGCCTCACCAGGATCGACCAAGCTGGACCATCAAATGTGCCTTCCAATTCACAATTGGACAAAGTGGTGGCATATCCAGTTAAAAATGGCAAGCCTAGTAGTAAATCAATCCGTATAGTCAAAGAATCGGAGAGTCGGGCTCGTCCAGAATTGAGAGACCAAGCTAGACCATCAAGTGTGCCTTCCAATTCACAATTAAGCAAAGTGGTGTCGTGTCCACTCCTGAATGGTAAGCCTAGCAGCAAAGAGGTCCCAATAGTGGAAGGTGATTTCTCCGAATTCCAACCGTGCCTGTTGGTTTTGAATTTGACTGATTACATGGAAATAATATTTTTGCTTTTTCTTCCAGTTAAAAGAAATACAGTGGACCCTTTACTACTACCTGTGAGCACACCAGATACCCGTCCTTATAAGAAGATGAAAACTGCAGATAGTAGACCGCCAGATATTTTTTGGGAGGAAAGACTGCGGACAGCTGAAGGTAATGGCACCTTGGTCCTGCTAGACAATCTAGATCCATCCTTTACATCCTCCGAAGTACAGGATCTAGTTTGGGCTGCATTCAAGCAGATGGTTGATGCAAAAATGATACCATGCACTCCTTTTTCTAATCCACGCTATGGTACAGCAGCTTCGTGTGGCTATTTACATATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

408

Amino Acids

46.51

Weight (kDa)

9.0

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15605 AT3G15605 AT3G15605 AT3G15605
fragaria_vesca	FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540 FvH4_6g30540
malus_domestica	MD09G1219000.v1.1
prunus_persica	Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1 Prupe.3G077800_v2.0.a1
pyrus_communis	pycom09g13690
rosa_chinensis	RchiOBHm_Chr2g0136961
rosa_laevigata	RLG00000019591
rosa_multiflora	Rmu_co8420089.1_g000001 Rmu_sc0001374.1_g000069
rosa_roxburghii	Rroxscaffold_2G00107840 Rroxscaffold_2G00107850
rosa_rugosa	Rorug02G0335700 Rorug02G0335800 Rorug02G0335900 Rorug02G0336000 Rorug02G0336100 Rorug02G0336200
rosa_samantha	Rh2AG385600 Rh2BG392600 Rh2CG372800 Rh2DG408700
rosa_wichuraiana	Rw2G031540 Rw2G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	336, 978
AccB1I	GGYRCC	1 cut(s)	1055
AccB7I	CCANNNNNTGG	1 cut(s)	1187
AccI	GTMKAC	1 cut(s)	1003
AciI	CCGC	3 cut(s)	344, 1007, 1036
AclWI	GGATC	3 cut(s)	587, 1076, 1119
AcoI	YGGCCR	2 cut(s)	248, 450
AcsI	RAATTY	3 cut(s)	41, 845, 871
AcuI	CTGAAG	1 cut(s)	1065
AfaI	GTAC	6 cut(s)	128, 147, 281, 472, 1107, 1192
AfiI	CCNNNNNNNGG	2 cut(s)	826, 1187
AgsI	TTSAA	3 cut(s)	286, 871, 1132
AjnI	CCWGG	1 cut(s)	575
AjuI	GAANNNNNNNTTGG	6 cut(s)	165, 197, 360, 392, 446, 478
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	254, 305, 590, 731, 1043, 1199
AluI	AGCT	6 cut(s)	254, 305, 590, 731, 1043, 1199
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	3 cut(s)	587, 1076, 1119
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	248, 450
ApeKI	GCWGC	4 cut(s)	341, 807, 1124, 1196
ApoI	RAATTY	3 cut(s)	41, 845, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspLEI	GCGC	2 cut(s)	167, 492
AspS9I	GGNCC	4 cut(s)	593, 817, 934, 1063
AsuHPI	GGTGA	3 cut(s)	65, 565, 845
AvaII	GGWCC	4 cut(s)	593, 817, 934, 1063
BanI	GGYRCC	1 cut(s)	1055
BanII	GRGCYC	1 cut(s)	709
BarI	GAAGNNNNNNTAC	2 cut(s)	1183, 1215
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	4 cut(s)	328, 819, 1111, 1208
BccI	CCATC	4 cut(s)	604, 745, 1093, 1132
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	6 cut(s)	663, 732, 804, 1070, 1079, 1115
BfmI	CTRYAG	2 cut(s)	457, 993
BfoI	RGCGCY	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	4 cut(s)	342, 808, 1125, 1197
BlsI	GCNGC	4 cut(s)	343, 809, 1126, 1198
BmcAI	AGTACT	2 cut(s)	128, 281
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	4 cut(s)	593, 817, 934, 1063
BmgT120I	GGNCC	4 cut(s)	593, 817, 934, 1063
BmiI	GGNNCC	3 cut(s)	819, 936, 1057
BmrFI	CCNGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	16, 1135
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	1059
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	826, 1187
Bse1I	ACTGG	4 cut(s)	100, 166, 644, 914
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	5 cut(s)	7, 91, 280, 1085, 1094
BseLI	CCNNNNNNNGG	2 cut(s)	826, 1187
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	4 cut(s)	100, 166, 644, 914
BseXI	GCAGC	4 cut(s)	328, 819, 1111, 1208
BshFI	GGCC	2 cut(s)	250, 452
BshNI	GGYRCC	1 cut(s)	1055
BsiHKAI	GWGCWC	1 cut(s)	959
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	411, 803
BslI	CCNNNNNNNGG	2 cut(s)	826, 1187
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	2 cut(s)	411, 803
BsmI	GAATGC	1 cut(s)	1127
BsnI	GGCC	2 cut(s)	250, 452
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	709, 959
Bsp143I	GATC	4 cut(s)	514, 579, 1081, 1111
BspACI	CCGC	3 cut(s)	344, 1007, 1036
BspANI	GGCC	2 cut(s)	250, 452
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	819, 936, 1057
BspMAI	CTGCAG	1 cut(s)	997
BspPI	GGATC	3 cut(s)	587, 1076, 1119
BspT107I	GGYRCC	1 cut(s)	1055
BspTNI	GGTCTC	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	100, 166, 644, 914
BssECI	CCNNGG	1 cut(s)	1059
BssMI	GATC	4 cut(s)	514, 579, 1081, 1111
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	4 cut(s)	313, 461, 855, 931
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	252, 659
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	5 cut(s)	7, 91, 280, 1085, 1094
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 492
BstKTI	GATC	4 cut(s)	517, 582, 1084, 1114
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	514, 579, 1081, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	575
BstSFI	CTRYAG	2 cut(s)	457, 993
BstV1I	GCAGC	4 cut(s)	328, 819, 1111, 1208
BstX2I	RGATCY	2 cut(s)	1081, 1111
BstYI	RGATCY	2 cut(s)	1081, 1111
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	250, 452
BtsCI	GGATG	5 cut(s)	7, 91, 280, 1085, 1094
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	2 cut(s)	252, 659
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	167, 492
Cfr13I	GGNCC	4 cut(s)	593, 817, 934, 1063
Csp6I	GTAC	6 cut(s)	127, 146, 280, 471, 1106, 1191
CviAII	CATG	2 cut(s)	886, 1161
CviQI	GTAC	6 cut(s)	127, 146, 280, 471, 1106, 1191
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	4 cut(s)	516, 581, 1083, 1113
DpnII	GATC	4 cut(s)	514, 579, 1081, 1111
DraI	TTTAAA	1 cut(s)	322
EaeI	YGGCCR	2 cut(s)	248, 450
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	709
Eco31I	GGTCTC	1 cut(s)	717
Eco47I	GGWCC	4 cut(s)	593, 817, 934, 1063
Eco57I	CTGAAG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	2 cut(s)	889, 1164
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FaqI	GGGAC	2 cut(s)	411, 803
FatI	CATG	2 cut(s)	885, 1160
FauI	CCCGC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	1003
Fnu4HI	GCNGC	4 cut(s)	342, 808, 1125, 1197
FokI	GGATG	4 cut(s)	98, 287, 1072, 1081
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	4 cut(s)	342, 808, 1125, 1197
FspBI	CTAG	6 cut(s)	663, 732, 804, 1070, 1079, 1115
GlaI	GCGC	2 cut(s)	166, 491
GluI	GCNGC	4 cut(s)	342, 808, 1125, 1197
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	250, 452
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	2 cut(s)	167, 492
Hin1II	CATG	2 cut(s)	889, 1164
Hin6I	GCGC	2 cut(s)	165, 490
HinP1I	GCGC	2 cut(s)	165, 490
HincII	GTYRAC	2 cut(s)	316, 484
HindII	GTYRAC	2 cut(s)	316, 484
HinfI	GANTC	5 cut(s)	35, 140, 418, 692, 700
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	3 cut(s)	65, 565, 845
Hpy166II	GTNNAC	6 cut(s)	148, 316, 484, 785, 934, 1004
Hpy188I	TCNGA	5 cut(s)	40, 309, 697, 844, 1102
Hpy188III	TCNNGA	5 cut(s)	11, 512, 713, 790, 1079
Hpy8I	GTNNAC	6 cut(s)	148, 316, 484, 785, 934, 1004
HpyAV	CCTTC	5 cut(s)	217, 618, 759, 824, 1040
HpyCH4III	ACNGT	4 cut(s)	313, 461, 855, 931
HpyCH4V	TGCA	7 cut(s)	7, 264, 502, 995, 1127, 1148, 1164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	889, 1164
HspAI	GCGC	2 cut(s)	165, 490
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	514, 579, 1081, 1111
Lsp1109I	GCAGC	4 cut(s)	328, 819, 1111, 1208
LweI	GCATC	2 cut(s)	16, 1135
MaeI	CTAG	6 cut(s)	663, 732, 804, 1070, 1079, 1115
MalI	GATC	4 cut(s)	516, 581, 1083, 1113
MboI	GATC	4 cut(s)	514, 579, 1081, 1111
MboII	GAAGA	4 cut(s)	236, 449, 902, 994
MfeI	CAATTG	2 cut(s)	372, 620
MflI	RGATCY	2 cut(s)	1081, 1111
MhlI	GDGCHC	2 cut(s)	709, 959
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	2 cut(s)	358, 874
MnlI	CCTC	7 cut(s)	161, 432, 439, 581, 808, 1018, 1108
MseI	TTAA	7 cut(s)	45, 321, 531, 549, 648, 764, 918
MspA1I	CMGCKG	2 cut(s)	254, 1043
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	2 cut(s)	372, 620
Mva1269I	GAATGC	1 cut(s)	1127
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	4 cut(s)	514, 579, 1081, 1111
NlaIII	CATG	2 cut(s)	889, 1164
NlaIV	GGNNCC	3 cut(s)	819, 936, 1057
PctI	GAATGC	1 cut(s)	1127
PfeI	GAWTC	4 cut(s)	35, 140, 418, 692
PflMI	CCANNNNNTGG	1 cut(s)	1187
PkrI	GCNGC	4 cut(s)	343, 809, 1126, 1198
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PpuMI	RGGWCCY	1 cut(s)	817
PsiI	TTATAA	2 cut(s)	336, 978
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	3 cut(s)	819, 936, 1057
PspPI	GGNCC	4 cut(s)	593, 817, 934, 1063
PspPPI	RGGWCCY	1 cut(s)	817
PstI	CTGCAG	1 cut(s)	997
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	1081, 1111
PvuII	CAGCTG	2 cut(s)	254, 1043
RsaI	GTAC	6 cut(s)	128, 147, 281, 472, 1107, 1192
RsaNI	GTAC	6 cut(s)	127, 146, 280, 471, 1106, 1191
SaqAI	TTAA	7 cut(s)	45, 321, 531, 549, 648, 764, 918
SatI	GCNGC	4 cut(s)	342, 808, 1125, 1197
Sau3AI	GATC	4 cut(s)	514, 579, 1081, 1111
Sau96I	GGNCC	4 cut(s)	593, 817, 934, 1063
ScaI	AGTACT	2 cut(s)	128, 281
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	2 cut(s)	709, 959
SfaNI	GCATC	2 cut(s)	16, 1135
SfcI	CTRYAG	2 cut(s)	457, 993
SinI	GGWCC	4 cut(s)	593, 817, 934, 1063
SsiI	CCGC	3 cut(s)	344, 1007, 1036
SspI	AATATT	3 cut(s)	498, 545, 897
SspMI	CTAG	6 cut(s)	663, 732, 804, 1070, 1079, 1115
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	4 cut(s)	313, 461, 855, 931
TaqI	TCGA	1 cut(s)	582
TatI	WGTACW	4 cut(s)	126, 279, 470, 1105
TfiI	GAWTC	4 cut(s)	35, 140, 418, 692
Tru1I	TTAA	7 cut(s)	45, 321, 531, 549, 648, 764, 918
Tru9I	TTAA	7 cut(s)	45, 321, 531, 549, 648, 764, 918
TscAI	CASTG	1 cut(s)	936
TseI	GCWGC	4 cut(s)	341, 807, 1124, 1196
TspDTI	ATGAA	2 cut(s)	35, 1001
TspGWI	ACGGA	3 cut(s)	133, 455, 668
TspRI	CASTG	1 cut(s)	936
Van91I	CCANNNNNTGG	1 cut(s)	1187
VpaK11BI	GGWCC	4 cut(s)	593, 817, 934, 1063
XapI	RAATTY	3 cut(s)	41, 845, 871
XbaI	TCTAGA	1 cut(s)	1078
XcmI	CCANNNNNNNNNTGG	2 cut(s)	619, 1017
XmiI	GTMKAC	1 cut(s)	1003
XspI	CTAG	6 cut(s)	663, 732, 804, 1070, 1079, 1115
ZrmI	AGTACT	2 cut(s)	128, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.