AT3G17830

Chaperone protein dnaJ 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6101753 .. 6104805
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17830.1

Sequence Viewer

Length: 1554 bp
ATGGCTGCAATGGCTCGCTGTGCTTTGATTCCATCTATAAACCCAGCTCATAGCTTCCGTCATCAGTTTCCGCAACCCAATGCGTCATTCTATTTACCTCCCACTCTTCCGATTTTTTCGCGTGTTCGGAGATTTGGAATTTCCGGCGGATATCGCCGCCGTGTGATCACCATGGCCGCCGGAACTGATCACTACTCGACTTTGAATGTGAACCGCAATGCCACCTTGCAGGAGATCAAGAGCTCGTATAGAAAACTCGCTCGCAAGTATCACCCAGATATGAACAAGAACCCTGGTGCAGAAGATAAGTTCAAACAGATAAGTGCTGCTTACGAGGTATTATCTGATGAGGAGAAGAGATCTGCCTATGATCGGTTCGGCGAGGCTGGTTTAGAAGGTGATTTTAATGGATCACAGGATACTTCACCAGGGGTGGATCCATTTGACTTGTACAGTGCATTCTTTGGAGGTTCTGATGGATTCTTTGGGGGAATGGGTGAATCAGGAGGGATGGGTTTTGATTTCATGAATAAGAGAAGCCTAGACCTTGACATTCGATATGACCTGCGGTTGAGCTTTGAAGAGGCAGTTTTTGGAGTAAAACGGGAGATTGAGGTTTCTTATTTAGAAACATGTGATGGTTGTGGAGGAACTGGTGCTAAATCCAGTAACTCCATTAAACAGTGTAGTAGTTGTGATGGTAAAGGACGTGTGATGAATTCTCAGAGAACACCCTTTGGAATCATGTCTCAGGTGTCCACTTGCTCCAAATGTGGTGGTGAAGGAAAAACTATCACTGATAAGTGTCGAAAGTGCATTGGCAACGGGAGACTACGGGCTAGGAAAAAGATGGATGTTGTAGTCCCTCCTGGTGTCAGCGATAGAGCCACAATGCGAATTCAAGGAGAAGGTAACATGGACAAGAGAAGTGGAAGAGCTGGTGACTTGTTCATCGTACTTCAAGTTGATGAGAAGCGTGGAATTCGGCGGGAAGGGCTTAATTTATACTCCAATATCAACATAGATTTCACAGATGCTATACTTGGGGCGACCACAAAGGTAGAAACGGTTGAGGGATCAATGGATCTTCGGATTCCGCCAGGAACTCAACCTGGCGACACCGTAAAATTACCTAGGAAAGGAGTTCCAGACACGGATAGACCTTCAATCCGGGGAGACCATTGCTTTGTAGTGAAAATTTCGATCCCCAAAAAACTGAGCGAGAGGGAGCGCAAGTTGGTAGAGGAATTCTCGTCGCTCAGAAGATCTAGTAGTAGTACTGGACCTACTGAAACTCGTCAAGAGGAGCAGAGTTTTGGCTCAGAGCCCAGAAAAGAACCATCTTTGTGGCATAAAATGAAGAATTTCATAAGACCAGAAGATTCAAGAACGAAATTTGGGACTATGAGCTTAAACCCATCATTACCATTACGAAGAATGAAAGTGTCAGAGACTTCAATTGCTTTTTCAGTCTTGGCTCTGTGCGTTATAACCTCGGCTGTTGCATTGGTACAGAAGAAGGGTAATCGCTTGAAACAAAAGAAAGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

57.26

Weight (kDa)

9.5

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 63 - 124 6.5e-27 DnaJ domain
DnaJ_C PF01556 185 - 403 5.4e-39 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 212 - 276 4.3e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1490
Acc36I ACCTGC 1 cut(s) 573
AccII CGCG 1 cut(s) 121
AciI CCGC 8 cut(s) 71, 147, 157, 177, 214, 568, 988, 1097
AclWI GGATC 6 cut(s) 418, 431, 444, 1084, 1092, 1198
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 8 cut(s) 138, 718, 897, 981, 1197, 1247, 1363, 1394
AfaI GTAC 4 cut(s) 452, 957, 1279, 1512
AfiI CCNNNNNNNGG 2 cut(s) 372, 1139
AflIII ACRYGT 2 cut(s) 632, 709
AgsI TTSAA 9 cut(s) 205, 313, 581, 902, 962, 1167, 1386, 1458, 1534
AjiI CACGTC 1 cut(s) 710
AjnI CCWGG 5 cut(s) 292, 427, 868, 1099, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 6 cut(s) 47, 54, 243, 576, 938, 1410
AluI AGCT 6 cut(s) 47, 54, 243, 576, 938, 1410
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 4 cut(s) 753, 823, 1170, 1445
AlwI GGATC 6 cut(s) 418, 431, 444, 1084, 1092, 1198
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 5, 326
ApoI RAATTY 8 cut(s) 138, 718, 897, 981, 1197, 1247, 1363, 1394
ArsI GACNNNNNNTTYG 2 cut(s) 1169, 1201
Asp700I GAANNNNTTC 1 cut(s) 1364
AspA2I CCTAGG 1 cut(s) 1133
AspLEI GCGC 1 cut(s) 1233
AspS9I GGNCC 1 cut(s) 1283
AsuC2I CCSGG 1 cut(s) 1172
AsuHPI GGTGA 7 cut(s) 160, 263, 410, 417, 509, 791, 953
AvaII GGWCC 1 cut(s) 1283
AvrII CCTAGG 1 cut(s) 1133
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 245, 1329
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 313
BccI CCATC 8 cut(s) 40, 470, 505, 632, 692, 844, 1348, 1426
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 5 cut(s) 294, 429, 870, 1101, 1113
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 2 cut(s) 165, 187
BcnI CCSGG 1 cut(s) 1172
BcoDI GTCTC 4 cut(s) 753, 823, 1170, 1445
BfaI CTAG 4 cut(s) 542, 840, 1134, 1269
BfuAI ACCTGC 1 cut(s) 573
BfuI GTATCC 1 cut(s) 412
BglII AGATCT 2 cut(s) 359, 1265
BisI GCNGC 4 cut(s) 6, 157, 177, 327
BlnI CCTAGG 1 cut(s) 1133
BlsI GCNGC 4 cut(s) 7, 158, 178, 328
BmcAI AGTACT 1 cut(s) 1279
Bme1390I CCNGG 6 cut(s) 294, 429, 870, 1101, 1113, 1172
Bme18I GGWCC 1 cut(s) 1283
BmgBI CACGTC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 6 cut(s) 294, 429, 870, 1101, 1113, 1172
BmsI GCATC 1 cut(s) 1024
BplI GAGNNNNNCTC 2 cut(s) 1235, 1267
BpuMI CCSGG 1 cut(s) 1172
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 6 cut(s) 171, 292, 428, 1133, 1171, 1494
BsaXI ACNNNNNCTCC 2 cut(s) 1220, 1250
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 1139
Bse1I ACTGG 3 cut(s) 658, 666, 1285
Bse3DI GCAATG 3 cut(s) 15, 223, 1180
BseBI CCWGG 5 cut(s) 294, 429, 870, 1101, 1113
BseDI CCNNGG 6 cut(s) 171, 292, 428, 1133, 1171, 1494
BseGI GGATG 2 cut(s) 516, 859
BseLI CCNNNNNNNGG 2 cut(s) 372, 1139
BseMI GCAATG 3 cut(s) 15, 223, 1180
BseMII CTCAG 5 cut(s) 737, 764, 1208, 1273, 1335
BseNI ACTGG 3 cut(s) 658, 666, 1285
BseRI GAGGAG 2 cut(s) 365, 1319
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 144, 180, 1171
BslFI GGGAC 2 cut(s) 848, 1414
BslI CCNNNNNNNGG 2 cut(s) 372, 1139
BsmAI GTCTC 4 cut(s) 753, 823, 1170, 1445
BsmFI GGGAC 2 cut(s) 848, 1414
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 1170
Bsp1286I GDGCHC 2 cut(s) 245, 1329
Bsp1407I TGTACA 1 cut(s) 450
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 8 cut(s) 71, 147, 157, 177, 214, 568, 988, 1097
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 5 cut(s) 736, 763, 1209, 1272, 1334
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 6 cut(s) 418, 431, 444, 1084, 1092, 1198
BspQI GCTCTTC 1 cut(s) 928
BspTNI GGTCTC 1 cut(s) 1170
BsrDI GCAATG 3 cut(s) 15, 223, 1180
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 3 cut(s) 658, 666, 1285
BssECI CCNNGG 6 cut(s) 171, 292, 428, 1133, 1171, 1494
BssT1I CCWWGG 2 cut(s) 171, 1133
Bst2UI CCWGG 5 cut(s) 294, 429, 870, 1101, 1113
Bst4CI ACNGT 4 cut(s) 455, 684, 1069, 1123
Bst6I CTCTTC 4 cut(s) 111, 350, 576, 928
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 16, 262
BstDEI CTNAG 5 cut(s) 723, 750, 1217, 1259, 1321
BstDSI CCRYGG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 2 cut(s) 516, 859
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 1233
BstMAI GTCTC 4 cut(s) 753, 823, 1170, 1445
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 994
BstNI CCWGG 5 cut(s) 294, 429, 870, 1101, 1113
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 6 cut(s) 292, 427, 868, 1099, 1111, 1170
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 4 cut(s) 359, 436, 1084, 1265
BstXI CCANNNNNNTGG 1 cut(s) 1347
BstYI RGATCY 4 cut(s) 359, 436, 1084, 1265
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 710
BtsCI GGATG 2 cut(s) 516, 859
BtsIMutI CAGTG 3 cut(s) 460, 689, 795
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 16, 262
CciI TCATGA 1 cut(s) 525
CfoI GCGC 1 cut(s) 1233
Cfr13I GGNCC 1 cut(s) 1283
CseI GACGC 1 cut(s) 72
Csp6I GTAC 4 cut(s) 451, 956, 1278, 1511
CspCI CAANNNNNGTGG 4 cut(s) 757, 792, 910, 945
CviAII CATG 5 cut(s) 172, 526, 633, 745, 916
CviQI GTAC 4 cut(s) 451, 956, 1278, 1511
DdeI CTNAG 5 cut(s) 723, 750, 1217, 1259, 1321
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 4 cut(s) 111, 350, 576, 928
EarI CTCTTC 4 cut(s) 111, 350, 576, 928
EciI GGCGGA 2 cut(s) 162, 1086
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 171, 1133
Eco24I GRGCYC 2 cut(s) 245, 1329
Eco31I GGTCTC 1 cut(s) 1170
Eco32I GATATC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 1283
Eco53kI GAGCTC 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoRI GAATTC 4 cut(s) 718, 897, 981, 1247
EcoRII CCWGG 5 cut(s) 292, 427, 868, 1099, 1111
EcoRV GATATC 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 171, 1133
EcoT38I GRGCYC 2 cut(s) 245, 1329
ErhI CCWWGG 2 cut(s) 171, 1133
FaeI CATG 5 cut(s) 175, 529, 636, 748, 919
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 2 cut(s) 848, 1414
FatI CATG 5 cut(s) 171, 525, 632, 744, 915
FauI CCCGC 1 cut(s) 981
FbaI TGATCA 2 cut(s) 165, 187
Fnu4HI GCNGC 4 cut(s) 6, 157, 177, 327
FokI GGATG 2 cut(s) 523, 866
FriOI GRGCYC 2 cut(s) 245, 1329
Fsp4HI GCNGC 4 cut(s) 6, 157, 177, 327
FspBI CTAG 4 cut(s) 542, 840, 1134, 1269
GlaI GCGC 1 cut(s) 1232
GluI GCNGC 4 cut(s) 6, 157, 177, 327
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 176
HapII CCGG 3 cut(s) 144, 180, 1171
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 1233
Hin1II CATG 5 cut(s) 175, 529, 636, 748, 919
Hin6I GCGC 1 cut(s) 1231
HinP1I GCGC 1 cut(s) 1231
HinfI GANTC 6 cut(s) 28, 480, 500, 741, 1093, 1382
HpaII CCGG 3 cut(s) 144, 180, 1171
HphI GGTGA 7 cut(s) 160, 263, 410, 417, 509, 791, 953
Hpy166II GTNNAC 2 cut(s) 211, 759
Hpy188I TCNGA 9 cut(s) 111, 129, 346, 475, 726, 1092, 1262, 1324, 1450
Hpy188III TCNNGA 6 cut(s) 238, 504, 526, 1148, 1301, 1386
Hpy8I GTNNAC 2 cut(s) 211, 759
Hpy99I CGWCG 1 cut(s) 1258
HpyAV CCTTC 6 cut(s) 389, 776, 902, 986, 1173, 1513
HpyCH4III ACNGT 4 cut(s) 455, 684, 1069, 1123
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 6 cut(s) 8, 229, 299, 458, 816, 1505
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 994
HpyF3I CTNAG 5 cut(s) 723, 750, 1217, 1259, 1321
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 5 cut(s) 175, 529, 636, 748, 919
HspAI GCGC 1 cut(s) 1231
Ksp22I TGATCA 2 cut(s) 165, 187
LguI GCTCTTC 1 cut(s) 928
LmnI GCTCC 3 cut(s) 770, 1228, 1306
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 1024
MaeI CTAG 4 cut(s) 542, 840, 1134, 1269
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 3 cut(s) 668, 911, 941
MfeI CAATTG 1 cut(s) 1458
MflI RGATCY 4 cut(s) 359, 436, 1084, 1265
MhlI GDGCHC 2 cut(s) 245, 1329
MroXI GAANNNNTTC 1 cut(s) 1364
MseI TTAA 5 cut(s) 405, 678, 999, 1412, 1552
MslI CAYNNNNRTG 1 cut(s) 1345
MspI CCGG 3 cut(s) 144, 180, 1171
MspR9I CCNGG 6 cut(s) 294, 429, 870, 1101, 1113, 1172
MunI CAATTG 1 cut(s) 1458
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 5 cut(s) 294, 429, 870, 1101, 1113
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 994
NciI CCSGG 1 cut(s) 1172
NcoI CCATGG 1 cut(s) 171
NlaIII CATG 5 cut(s) 175, 529, 636, 748, 919
NlaIV GGNNCC 1 cut(s) 438
NmeAIII GCCGAG 1 cut(s) 1475
NmuCI GTSAC 1 cut(s) 941
NspI RCATGY 1 cut(s) 636
PagI TCATGA 1 cut(s) 525
PciI ACATGT 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 928
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 1364
PfeI GAWTC 6 cut(s) 28, 480, 500, 741, 1093, 1382
PkrI GCNGC 4 cut(s) 7, 158, 178, 328
PscI ACATGT 1 cut(s) 632
PsiI TTATAA 1 cut(s) 1490
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 5 cut(s) 292, 427, 868, 1099, 1111
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 5 cut(s) 292, 427, 868, 1099, 1111
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 1283
PsuI RGATCY 4 cut(s) 359, 436, 1084, 1265
RsaI GTAC 4 cut(s) 452, 957, 1279, 1512
RsaNI GTAC 4 cut(s) 451, 956, 1278, 1511
RseI CAYNNNNRTG 1 cut(s) 1345
SacI GAGCTC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 928
SaqAI TTAA 5 cut(s) 405, 678, 999, 1412, 1552
SatI GCNGC 4 cut(s) 6, 157, 177, 327
Sau96I GGNCC 1 cut(s) 1283
ScaI AGTACT 1 cut(s) 1279
ScrFI CCNGG 6 cut(s) 294, 429, 870, 1101, 1113, 1172
SduI GDGCHC 2 cut(s) 245, 1329
SfaNI GCATC 1 cut(s) 1024
SinI GGWCC 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 1345
SsiI CCGC 8 cut(s) 71, 147, 157, 177, 214, 568, 988, 1097
SspMI CTAG 4 cut(s) 542, 840, 1134, 1269
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 6 cut(s) 292, 427, 868, 1099, 1111, 1170
StyI CCWWGG 2 cut(s) 171, 1133
TaaI ACNGT 4 cut(s) 455, 684, 1069, 1123
TaiI ACGT 1 cut(s) 712
TaqI TCGA 4 cut(s) 197, 556, 808, 1202
TatI WGTACW 2 cut(s) 450, 1277
TauI GCSGC 2 cut(s) 159, 179
TfiI GAWTC 6 cut(s) 28, 480, 500, 741, 1093, 1382
Tru1I TTAA 5 cut(s) 405, 678, 999, 1412, 1552
Tru9I TTAA 5 cut(s) 405, 678, 999, 1412, 1552
TscAI CASTG 3 cut(s) 460, 689, 802
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 2 cut(s) 5, 326
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 8 cut(s) 296, 514, 542, 731, 940, 1357, 1373, 1454
TspGWI ACGGA 2 cut(s) 47, 1169
TspRI CASTG 3 cut(s) 460, 689, 802
VpaK11BI GGWCC 1 cut(s) 1283
XagI CCTNNNNNAGG 1 cut(s) 1137
XapI RAATTY 8 cut(s) 138, 718, 897, 981, 1197, 1247, 1363, 1394
XceI RCATGY 1 cut(s) 636
XmaJI CCTAGG 1 cut(s) 1133
XmnI GAANNNNTTC 1 cut(s) 1364
XspI CTAG 4 cut(s) 542, 840, 1134, 1269
ZrmI AGTACT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.