Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001723

Physical Location & Seq

Genomic Coordinates Reverse (-)

10058225 .. 10062422

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17580.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGCCCATCATCCAAACCCACTCACCTTACTCTTTTAGCTCCTCCACTCTCACACCCAGTTCCACATTCTTCATCGGAAAAAACCCAACTCTGAAACTCAATTTCGCTCCTTTCATCCGTACAAAACCTCAACGTTTGGTCCTCAAGGCCGCCGGAACCGATTACTACAAGACCCTCAACCTCGACAGAAATGCAAACCTGAAGGATATAAAGACCTCTTATCGAAAGCTCGCTCGGCAGTACCATCCTGATATGAACAAGGGCTCTGGAGCTGAAGACAAGTTCAAAGAGATTAGTGCTGCATATGAGGTCCTTTCAGATGAGGAGAAAAGAGCTACATATGACCGCTTTGGTGAGGCAGGCTTACAGGGAGAATATGGTTCCTCGAACATGGGTTCAGCCGGGGTCGATCCTTTTGACGTTTTTGATGCATTCTTTGGAGGAAGAGGTGGATCAGGAGGCATGAACTTCAATGTTAACATCAATACACCAAACACAGGAAATCAGAGCCTTGACATTTGGTATGAACTGCACCTTAGCTTTGAAGAATCCATTTTCGGAGGACAGAGGGAGTTTGAACTTTCTTGTATTGAGACATGTGATACTTGTAGTGGAACTGGTGCTAAATCTGATGATTGCATCAAATCATGTACTGCTTGCGGAGGAAGAGGAGGGGTGACAAAAACTCAGAGAACACCATTTGGCATGATATCGATGGTATCTACCTGCTCAAAGTGTGACGGTCAAGGTACAATAATAACTGATTCTTGCAAAAAATGCATTGGCAAGGGACAAGTAAAGTCAAAAAGAGCAATGGTTGTAACCATTCCAGCTGGTGTTAGTGATGGAGACACAATGAAAGTTCAAGGCGAGGGGAATGTTGATAAGAGAAGGGGTGTAGTTGGTGATGTCTACATAATGCTTCGTATAAACGAAAAGGCTGGAATTCGGAGGGATGGTCTCAATCTATATTCAACTATAAATATTGATTATACCGAGGCAATTTTAGGGACTGTGATAAAGGTAGAAACTGTGGAAGGCATGAAAGAGCTTAAAATTCCATCTGGAATTCAGCCTGGGGAAACAGTAAAGTTGTCCCGTATGGGGGTTCCCAACATGCGCAAGCCTTCTGTTAGAGGAGATCATCACTTTGTTGTGAATGTACTTATCCCAAAGAGAATCAGTGGCACAGAACGCACCCTTGTTGAAGAATTGGCTTCACTTAAGACCTCTAAGAAGGGCCACTCAGGTGCTTCAAAAGGCATTGGGACACAAGATGGGAACTCTGACATGCATAGTAGCAGAAACCATGAAACCAGTACTTTGAGCCAGGGCAAAAGACGTGTTTCATCCTTGTGGAACTCAATAAAAGGCGTATTGGGGGGGAGGCAGTCGCATGACAGATTTGCATCGGTTAGCGTGGACAGACCAGCACTTCTGAGGGGTTCAAGCCAGCCTTATTCCTTTTATATGGCTTCGATTTTTGGAGTCATTGTTGTAACTTGTATCTGTACCTTCATAGGAAAGACCAAAAGCATCACATTATCACAACACAAGGACAAACATAGAACAAACAACAATGTTGATAGAAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

533

Amino Acids

57.98

Weight (kDa)

9.3

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	54 - 115	1.4e-24	DnaJ domain
DnaJ_C	PF01556	175 - 391	3.3e-36	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	200 - 264	2.5e-14	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17830
fragaria_vesca	FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920
malus_domestica	MD14G1238500.v1.1
prunus_persica	Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1
pyrus_communis	pycom06g20580 pycom14g19960
rosa_chinensis	RchiOBHm_Chr3g0459211 RchiOBHm_Chr7g0178061
rosa_laevigata	RLG00000005475 RLG00000025103
rosa_multiflora	Rmu_co8457643.1_g000001 Rmu_sc0002435.1_g000013 Rmu_sc0014208.1_g000009 Rmu_sc0025216.1_g000001 Rmu_sc0025217.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275210 Rroxscaffold_6G00420410
rosa_rugosa	Rorug03G0034200 Rorug06G0413200
rosa_samantha	Rh3AG092300 Rh3BG095100 Rh3CG096200 Rh3DG096000 Rh7AG012400 Rh7BG012300 Rh7CG012300 Rh7DG012600
rosa_wichuraiana	Rw3G007920 Rw7G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1121
Acc36I	ACCTGC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	3 cut(s)	150, 346, 660
AclI	AACGTT	1 cut(s)	133
AclWI	GGATC	2 cut(s)	404, 460
AcsI	RAATTY	3 cut(s)	945, 1056, 1068
AcuI	CTGAAG	2 cut(s)	221, 294
AfaI	GTAC	7 cut(s)	121, 242, 652, 751, 1164, 1321, 1513
AfiI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
AflII	CTTAAG	1 cut(s)	1223
AflIII	ACRYGT	2 cut(s)	596, 1342
AgsI	TTSAA	9 cut(s)	286, 472, 545, 578, 866, 975, 1208, 1257, 1449
AjiI	CACGTC	1 cut(s)	1343
AjnI	CCWGG	2 cut(s)	1075, 1329
AleI	CACNNNNGTG	1 cut(s)	1248
AluBI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
AluI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
Alw26I	GTCTC	3 cut(s)	587, 843, 965
AlwI	GGATC	2 cut(s)	404, 460
AoxI	GGCC	2 cut(s)	147, 1240
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	3 cut(s)	945, 1056, 1068
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	3 cut(s)	139, 310, 1240
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	4 cut(s)	15, 365, 688, 917
AvaII	GGWCC	2 cut(s)	139, 310
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	7 cut(s)	14, 252, 709, 839, 950, 1069, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	1077, 1331
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	587, 843, 965
BfrI	CTTAAG	1 cut(s)	1223
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	2 cut(s)	150, 300
BlsI	GCNGC	2 cut(s)	151, 301
BmcAI	AGTACT	1 cut(s)	1321
Bme1390I	CCNGG	3 cut(s)	403, 1077, 1331
Bme18I	GGWCC	2 cut(s)	139, 310
BmgBI	CACGTC	1 cut(s)	1343
BmgT120I	GGNCC	3 cut(s)	139, 310, 1240
BmiI	GGNNCC	3 cut(s)	157, 382, 1110
BmrFI	CCNGG	3 cut(s)	403, 1077, 1331
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	4 cut(s)	418, 648, 1418, 1545
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	1408
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	4 cut(s)	402, 996, 1076, 1330
BsaXI	ACNNNNNCTCC	4 cut(s)	943, 973, 1479, 1509
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
Bse1I	ACTGG	3 cut(s)	57, 622, 1317
Bse3DI	GCAATG	1 cut(s)	819
Bse8I	GATNNNNATC	1 cut(s)	1408
BseBI	CCWGG	2 cut(s)	1077, 1331
BseCI	ATCGAT	1 cut(s)	713
BseDI	CCNNGG	4 cut(s)	402, 996, 1076, 1330
BseGI	GGATG	5 cut(s)	9, 114, 244, 961, 1349
BseJI	GATNNNNATC	1 cut(s)	1408
BseLI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	701, 1260, 1430
BseNI	ACTGG	3 cut(s)	57, 622, 1317
BseRI	GAGGAG	4 cut(s)	31, 338, 684, 1152
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	149, 1242
BshVI	ATCGAT	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	153, 402
BslFI	GGGAC	4 cut(s)	804, 1024, 1081, 1282
BslI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BsmAI	GTCTC	3 cut(s)	587, 843, 965
BsmFI	GGGAC	4 cut(s)	804, 1024, 1081, 1282
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	149, 1242
Bso31I	GGTCTC	1 cut(s)	965
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	409, 452, 1141
BspACI	CCGC	3 cut(s)	150, 346, 660
BspANI	GGCC	2 cut(s)	149, 1242
BspCNI	CTCAG	3 cut(s)	700, 1259, 1431
BspDI	ATCGAT	1 cut(s)	713
BspLI	GGNNCC	3 cut(s)	157, 382, 1110
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	404, 460
BspTI	CTTAAG	1 cut(s)	1223
BspTNI	GGTCTC	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	3 cut(s)	57, 622, 1317
BssECI	CCNNGG	4 cut(s)	402, 996, 1076, 1330
BssMI	GATC	3 cut(s)	409, 452, 1141
Bst2UI	CCWGG	2 cut(s)	1077, 1331
Bst4CI	ACNGT	4 cut(s)	743, 1015, 1033, 1087
Bst6I	CTCTTC	2 cut(s)	439, 661
BstAFI	CTTAAG	1 cut(s)	1223
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstC8I	GCNNGC	5 cut(s)	231, 361, 658, 1124, 1454
BstDEI	CTNAG	5 cut(s)	536, 687, 1233, 1246, 1439
BstF5I	GGATG	5 cut(s)	9, 114, 244, 961, 1349
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	3 cut(s)	412, 455, 1144
BstMAI	GTCTC	3 cut(s)	587, 843, 965
BstMBI	GATC	3 cut(s)	409, 452, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 777, 1194
BstNI	CCWGG	2 cut(s)	1077, 1331
BstNSI	RCATGY	3 cut(s)	600, 1120, 1294
BstSCI	CCNGG	3 cut(s)	401, 1075, 1329
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	282
Bsu15I	ATCGAT	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	149, 1242
BsuTUI	ATCGAT	1 cut(s)	713
BtrI	CACGTC	1 cut(s)	1343
BtsCI	GGATG	5 cut(s)	9, 114, 244, 961, 1349
BtsIMutI	CAGTG	1 cut(s)	1189
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	5 cut(s)	231, 361, 658, 1124, 1454
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	3 cut(s)	139, 310, 1240
ClaI	ATCGAT	1 cut(s)	713
Csp6I	GTAC	7 cut(s)	120, 241, 651, 750, 1163, 1320, 1512
CviQI	GTAC	7 cut(s)	120, 241, 651, 750, 1163, 1320, 1512
DdeI	CTNAG	5 cut(s)	536, 687, 1233, 1246, 1439
DpnI	GATC	3 cut(s)	411, 454, 1143
DpnII	GATC	3 cut(s)	409, 452, 1141
Eam1104I	CTCTTC	2 cut(s)	439, 661
EarI	CTCTTC	2 cut(s)	439, 661
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	965
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	139, 310
Eco57I	CTGAAG	2 cut(s)	221, 294
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	945, 1068
EcoRII	CCWGG	2 cut(s)	1075, 1329
EcoRV	GATATC	1 cut(s)	711
EcoT22I	ATGCAT	3 cut(s)	433, 782, 1296
EcoT38I	GRGCYC	1 cut(s)	266
FalI	AAGNNNNNCTT	2 cut(s)	1441, 1473
FaqI	GGGAC	4 cut(s)	804, 1024, 1081, 1282
FauNDI	CATATG	2 cut(s)	304, 340
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	150, 300
FokI	GGATG	4 cut(s)	101, 231, 968, 1336
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	150, 300
FspI	TGCGCA	1 cut(s)	1121
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	2 cut(s)	150, 300
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	149, 1242
HapII	CCGG	2 cut(s)	153, 402
HhaI	GCGC	1 cut(s)	1122
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	548, 764, 1179, 1488
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	153, 402
HphI	GGTGA	4 cut(s)	15, 365, 688, 917
Hpy166II	GTNNAC	3 cut(s)	478, 913, 1423
Hpy188III	TCNNGA	4 cut(s)	248, 267, 456, 1065
Hpy8I	GTNNAC	3 cut(s)	478, 913, 1423
HpyAV	CCTTC	6 cut(s)	196, 885, 1031, 1137, 1231, 1525
HpyCH4III	ACNGT	4 cut(s)	743, 1015, 1033, 1087
HpyCH4IV	ACGT	3 cut(s)	133, 420, 1342
HpyCH4V	TGCA	9 cut(s)	194, 302, 431, 532, 639, 771, 780, 1294, 1409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 777, 1194
HpyF3I	CTNAG	5 cut(s)	536, 687, 1233, 1246, 1439
HpySE526I	ACGT	3 cut(s)	133, 420, 1342
HspAI	GCGC	1 cut(s)	1120
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	409, 452, 1141
LmnI	GCTCC	3 cut(s)	44, 112, 269
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	4 cut(s)	418, 648, 1418, 1545
MaeII	ACGT	3 cut(s)	133, 420, 1342
MaeIII	GTNAC	4 cut(s)	676, 737, 820, 1498
MalI	GATC	3 cut(s)	411, 454, 1143
MboI	GATC	3 cut(s)	409, 452, 1141
MboII	GAAGA	6 cut(s)	61, 287, 456, 557, 678, 1220
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	6 cut(s)	100, 945, 1002, 1056, 1068, 1211
MlyI	GAGTC	1 cut(s)	1497
Mph1103I	ATGCAT	3 cut(s)	433, 782, 1296
MseI	TTAA	3 cut(s)	477, 1053, 1224
MslI	CAYNNNNRTG	2 cut(s)	1248, 1354
MspA1I	CMGCKG	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	1223
MspI	CCGG	2 cut(s)	153, 402
MspR9I	CCNGG	3 cut(s)	403, 1077, 1331
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	1077, 1331
MwoI	GCNNNNNNNGC	3 cut(s)	235, 777, 1194
NciI	CCSGG	1 cut(s)	403
NdeI	CATATG	2 cut(s)	304, 340
NdeII	GATC	3 cut(s)	409, 452, 1141
NlaIV	GGNNCC	3 cut(s)	157, 382, 1110
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	676, 737
NsbI	TGCGCA	1 cut(s)	1121
NsiI	ATGCAT	3 cut(s)	433, 782, 1296
NspI	RCATGY	3 cut(s)	600, 1120, 1294
OliI	CACNNNNGTG	1 cut(s)	1248
PciI	ACATGT	1 cut(s)	596
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	548, 764, 1179
PkrI	GCNGC	2 cut(s)	151, 301
PleI	GAGTC	1 cut(s)	1496
PpsI	GAGTC	1 cut(s)	1496
PpuMI	RGGWCCY	1 cut(s)	310
PscI	ACATGT	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	1075, 1329
PspGI	CCWGG	2 cut(s)	1075, 1329
PspN4I	GGNNCC	3 cut(s)	157, 382, 1110
PspPI	GGNCC	3 cut(s)	139, 310, 1240
PspPPI	RGGWCCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	7 cut(s)	121, 242, 652, 751, 1164, 1321, 1513
RsaNI	GTAC	7 cut(s)	120, 241, 651, 750, 1163, 1320, 1512
RseI	CAYNNNNRTG	2 cut(s)	1248, 1354
SaqAI	TTAA	3 cut(s)	477, 1053, 1224
SatI	GCNGC	2 cut(s)	150, 300
Sau3AI	GATC	3 cut(s)	409, 452, 1141
Sau96I	GGNCC	3 cut(s)	139, 310, 1240
ScaI	AGTACT	1 cut(s)	1321
SchI	GAGTC	1 cut(s)	1497
ScrFI	CCNGG	3 cut(s)	403, 1077, 1331
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	4 cut(s)	418, 648, 1418, 1545
SinI	GGWCC	2 cut(s)	139, 310
SmiMI	CAYNNNNRTG	2 cut(s)	1248, 1354
SmlI	CTYRAG	2 cut(s)	143, 1223
SmoI	CTYRAG	2 cut(s)	143, 1223
Sse9I	AATT	6 cut(s)	100, 945, 1002, 1056, 1068, 1211
SsiI	CCGC	3 cut(s)	150, 346, 660
SspI	AATATT	1 cut(s)	985
StyD4I	CCNGG	3 cut(s)	401, 1075, 1329
TaaI	ACNGT	4 cut(s)	743, 1015, 1033, 1087
TaiI	ACGT	3 cut(s)	136, 423, 1345
TaqI	TCGA	6 cut(s)	183, 223, 386, 408, 713, 1478
TasI	AATT	6 cut(s)	100, 945, 1002, 1056, 1068, 1211
TatI	WGTACW	3 cut(s)	650, 1162, 1319
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	548, 764, 1179
Tru1I	TTAA	3 cut(s)	477, 1053, 1224
Tru9I	TTAA	3 cut(s)	477, 1053, 1224
TscAI	CASTG	1 cut(s)	1189
TseFI	GTSAC	2 cut(s)	676, 737
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	676, 737
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	1189
Vha464I	CTTAAG	1 cut(s)	1223
VpaK11BI	GGWCC	2 cut(s)	139, 310
XapI	RAATTY	3 cut(s)	945, 1056, 1068
XceI	RCATGY	3 cut(s)	600, 1120, 1294
XmiI	GTMKAC	1 cut(s)	912
ZrmI	AGTACT	1 cut(s)	1321
Zsp2I	ATGCAT	3 cut(s)	433, 782, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.