Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001723

Physical Location & Seq

Genomic Coordinates Forward (+)

797878 .. 801616

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGCCCATAATTCAAACCCACTCACCTTACTCTTTCAGCTCCTCCACTCTCAGACCCTCTTCCACATTTTTCACCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCCTTTCATCCGTACAAAACCTCCACGTTTGGTCCTCAGGGCCGCCGGAACCGATTACTATAAGACCCTCAACCTCGACAGAAATGCAACCCTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCGACAGTACCATCCTGATTTGAACAAGGGCTCTGGAGCTGAAGACAAGTTCAAAGAGATTAGTGCTGCATATGAGGTCCTATCAGATGAGGAGAAAAGAGCTTCGTATGACCGCTTTGGCGAGGCAGGCTTACAGGGAGAATATGGTTCTTCGAACATGGGTTCAGCCGGGGTGGATCCTTTTGACGTTTTTGATGCGTACTTTGGGGGAAGGGGTGAATCAGGAGGCATGAACTTCAATTTTAACTTCAATACGCCAAACTCAGGAAATCAGGGCCTTGACATTCGGTATGAACTGCAACTGAGCTTTGAAGAATCCATTTTCGGAGGACAGAAGGAATTTGAAGTTTCTTGTGTTGAGACTTGTGATACGTGTGGTGGAAGTGGTGCTAAATCTGATAACTGCATCAAATCATGTACTGGTTGTGGAGGAAGAGGAGGGGTGACAAAAACTCAGAGAACACCATTTGGCATGATATCCATGGTATCTACCTGCTCAAAGTGTGACGGTCAAGGTACAATAATAACTGATCCCTGCAAAAAATGCAATGGCAAGGGACAAGTGCAGTCAAAAAGAGCAATGGTTGTAACCATTCCAGCTGGTGTTAGTGATGGAGACACAATGAAAGTTCAAGGGGAGGGGAATATTGATAAGAGAAGGGGTGTAGTTGGTGATGTCTACATAATGCTTCGTATAAATGAAAAGGCTGGAATTCGGAGGGAGGGTGTCAATCTATATTCAACTATAAATATTGATTATACTGAGGCTATTTTAGGAACTGTGATAAAGGTAGAAACTGTGGAAGGCATGAAAGAGCTTGAAATTCCTTCTGGAATTCAGCCTGGAGAAACAGTAAAGTTGTCCCGTATGGGGGTTCCAAACATGCGTAAACCTTCTGTTAGAGGAGATCATCACTTTGTTGTGAATGTACTTATTCCAAAGAGAATCAGTGGCGCAGAACGCACACTTGTTGAAGAACTCGCTTCACTTAGGACCTCTAAAAAGGGCCACTCAGGTGCTTCAAAAGGCACTGGGACACAAGATGGGAATTCTGACGTGCATAAAAGCAGAAACCACGCAACTAGTAGTTCAAGGCAGGGGAAAAAATGTGTTTCGTCCTTGTGGAACTCTATAAAAGGCGTATTGGGGTATGCCTTTGTGTCTCATTTCCATAAGTTCTGGTTTTTGGTCTATCTTCATGTTAAAAGAAGAAAATTTCTGCATTCTATTCTTGTGGTTCTGTCATTTCTTGGCTCTCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

499

Amino Acids

54.57

Weight (kDa)

9.29

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	54 - 115	4.4e-25	DnaJ domain
DnaJ_C	PF01556	173 - 391	3.9e-37	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	200 - 264	1.3e-14	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17830
fragaria_vesca	FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920
malus_domestica	MD14G1238500.v1.1
prunus_persica	Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1
pyrus_communis	pycom06g20580 pycom14g19960
rosa_chinensis	RchiOBHm_Chr3g0459211 RchiOBHm_Chr7g0178061
rosa_laevigata	RLG00000005475 RLG00000025103
rosa_multiflora	Rmu_co8457643.1_g000001 Rmu_sc0002435.1_g000013 Rmu_sc0014208.1_g000009 Rmu_sc0025216.1_g000001 Rmu_sc0025217.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275210 Rroxscaffold_6G00420410
rosa_rugosa	Rorug03G0034200 Rorug06G0413200
rosa_samantha	Rh3AG092300 Rh3BG095100 Rh3CG096200 Rh3DG096000 Rh7AG012400 Rh7BG012300 Rh7CG012300 Rh7DG012600
rosa_wichuraiana	Rw3G007920 Rw7G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	2 cut(s)	150, 346
AclWI	GGATC	3 cut(s)	404, 417, 758
AcsI	RAATTY	6 cut(s)	572, 945, 1056, 1068, 1282, 1448
AcuI	CTGAAG	2 cut(s)	221, 294
AfaI	GTAC	6 cut(s)	121, 242, 434, 652, 751, 1164
AfiI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
AflIII	ACRYGT	1 cut(s)	605
AhlI	ACTAGT	1 cut(s)	1316
AjiI	CACGTC	1 cut(s)	1291
AjnI	CCWGG	1 cut(s)	1075
AleI	CACNNNNGTG	1 cut(s)	1248
AluBI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
AluI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
Alw26I	GTCTC	3 cut(s)	587, 843, 1401
AlwI	GGATC	3 cut(s)	404, 417, 758
AoxI	GGCC	3 cut(s)	147, 508, 1240
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	6 cut(s)	572, 945, 1056, 1068, 1282, 1448
AspLEI	GCGC	1 cut(s)	1190
AspS9I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	5 cut(s)	15, 64, 461, 688, 917
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	139, 310, 1227
AxyI	CCTNAGG	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	252, 839, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	1077
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	587, 843, 1401
BcuI	ACTAGT	1 cut(s)	1316
BfaI	CTAG	1 cut(s)	1317
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	2 cut(s)	150, 300
BlsI	GCNGC	2 cut(s)	151, 301
Bme1390I	CCNGG	2 cut(s)	403, 1077
Bme18I	GGWCC	3 cut(s)	139, 310, 1227
BmgBI	CACGTC	1 cut(s)	1291
BmgT120I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
BmiI	GGNNCC	3 cut(s)	157, 411, 1110
BmrFI	CCNGG	2 cut(s)	403, 1077
BmrI	ACTGGG	1 cut(s)	1275
BmsI	GCATC	2 cut(s)	418, 648
BmuI	ACTGGG	1 cut(s)	1275
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	2 cut(s)	288, 1098
Bpu14I	TTCGAA	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	402, 714
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 142, 943, 973, 1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
Bse1I	ACTGG	2 cut(s)	658, 1270
Bse21I	CCTNAGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	787, 819
BseBI	CCWGG	1 cut(s)	1077
BseDI	CCNNGG	2 cut(s)	402, 714
BseGI	GGATG	2 cut(s)	114, 244
BseLI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BseMI	GCAATG	2 cut(s)	787, 819
BseMII	CTCAG	7 cut(s)	64, 157, 510, 527, 701, 987, 1260
BseNI	ACTGG	2 cut(s)	658, 1270
BseRI	GAGGAG	4 cut(s)	31, 338, 684, 1152
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	818
BshFI	GGCC	3 cut(s)	149, 510, 1242
BsiSI	CCGG	3 cut(s)	75, 153, 402
BslFI	GGGAC	3 cut(s)	804, 1081, 1282
BslI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BsmAI	GTCTC	3 cut(s)	587, 843, 1401
BsmFI	GGGAC	3 cut(s)	804, 1081, 1282
BsmI	GAATGC	1 cut(s)	1456
BsnI	GGCC	3 cut(s)	149, 510, 1242
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	409, 763, 1141
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	2 cut(s)	150, 346
BspANI	GGCC	3 cut(s)	149, 510, 1242
BspCNI	CTCAG	7 cut(s)	63, 156, 509, 528, 700, 988, 1259
BspLI	GGNNCC	3 cut(s)	157, 411, 1110
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	3 cut(s)	404, 417, 758
BspT104I	TTCGAA	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	787, 819
BsrI	ACTGG	2 cut(s)	658, 1270
BssECI	CCNNGG	2 cut(s)	402, 714
BssMI	GATC	3 cut(s)	409, 763, 1141
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
Bst6I	CTCTTC	2 cut(s)	64, 661
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	606
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	231, 361
BstDEI	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	114, 244
BstHHI	GCGC	1 cut(s)	1190
BstKTI	GATC	3 cut(s)	412, 766, 1144
BstMAI	GTCTC	3 cut(s)	587, 843, 1401
BstMBI	GATC	3 cut(s)	409, 763, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	2 cut(s)	401, 1075
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	149, 510, 1242
BtgI	CCRYGG	1 cut(s)	714
BtrI	CACGTC	1 cut(s)	1291
BtsCI	GGATG	2 cut(s)	114, 244
BtsIMutI	CAGTG	2 cut(s)	1189, 1263
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	231, 361
CfoI	GCGC	1 cut(s)	1190
Cfr13I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
Csp6I	GTAC	6 cut(s)	120, 241, 433, 651, 750, 1163
CviAII	CATG	8 cut(s)	391, 463, 648, 706, 715, 1042, 1117, 1433
CviQI	GTAC	6 cut(s)	120, 241, 433, 651, 750, 1163
DdeI	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
DpnI	GATC	3 cut(s)	411, 765, 1143
DpnII	GATC	3 cut(s)	409, 763, 1141
Eam1104I	CTCTTC	2 cut(s)	64, 661
EarI	CTCTTC	2 cut(s)	64, 661
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	139, 310, 1227
Eco57I	CTGAAG	2 cut(s)	221, 294
Eco81I	CCTNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	3 cut(s)	310, 508, 1227
EcoRI	GAATTC	3 cut(s)	945, 1068, 1282
EcoRII	CCWGG	1 cut(s)	1075
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1436
FaqI	GGGAC	3 cut(s)	804, 1081, 1282
FatI	CATG	8 cut(s)	390, 462, 647, 705, 714, 1041, 1116, 1432
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	150, 300
FokI	GGATG	2 cut(s)	101, 231
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	150, 300
FspBI	CTAG	1 cut(s)	1317
GlaI	GCGC	1 cut(s)	1189
GluI	GCNGC	2 cut(s)	150, 300
GsuI	CTGGAG	2 cut(s)	288, 1098
HaeIII	GGCC	3 cut(s)	149, 510, 1242
HapII	CCGG	3 cut(s)	75, 153, 402
HhaI	GCGC	1 cut(s)	1190
Hin1II	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1436
Hin6I	GCGC	1 cut(s)	1188
HinP1I	GCGC	1 cut(s)	1188
HinfI	GANTC	3 cut(s)	452, 548, 1179
HpaII	CCGG	3 cut(s)	75, 153, 402
HphI	GGTGA	5 cut(s)	15, 64, 461, 688, 917
Hpy166II	GTNNAC	2 cut(s)	913, 1124
Hpy188I	TCNGA	8 cut(s)	53, 319, 560, 631, 690, 951, 1288, 1499
Hpy188III	TCNNGA	5 cut(s)	248, 267, 456, 498, 1065
Hpy8I	GTNNAC	2 cut(s)	913, 1124
HpyAV	CCTTC	7 cut(s)	196, 438, 562, 885, 1031, 1071, 1137
HpyCH4III	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
HpyCH4IV	ACGT	4 cut(s)	133, 420, 605, 1290
HpyCH4V	TGCA	9 cut(s)	194, 302, 532, 639, 771, 780, 799, 1294, 1456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
HpyF3I	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
HpySE526I	ACGT	4 cut(s)	133, 420, 605, 1290
Hsp92II	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1436
HspAI	GCGC	1 cut(s)	1188
Kzo9I	GATC	3 cut(s)	409, 763, 1141
LmnI	GCTCC	3 cut(s)	44, 112, 269
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	418, 648
MaeI	CTAG	1 cut(s)	1317
MaeII	ACGT	4 cut(s)	133, 420, 605, 1290
MaeIII	GTNAC	3 cut(s)	676, 737, 820
MalI	GATC	3 cut(s)	411, 765, 1143
MboI	GATC	3 cut(s)	409, 763, 1141
MboII	GAAGA	8 cut(s)	51, 287, 375, 557, 678, 1220, 1421, 1455
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	9 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1282, 1448
MseI	TTAA	2 cut(s)	477, 1437
MslI	CAYNNNNRTG	1 cut(s)	1248
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	3 cut(s)	75, 153, 402
MspR9I	CCNGG	2 cut(s)	403, 1077
Mva1269I	GAATGC	1 cut(s)	1456
MvaI	CCWGG	1 cut(s)	1077
MwoI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	409, 763, 1141
NlaIII	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1436
NlaIV	GGNNCC	3 cut(s)	157, 411, 1110
NmuCI	GTSAC	2 cut(s)	676, 737
NspI	RCATGY	1 cut(s)	1120
NspV	TTCGAA	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	1248
PctI	GAATGC	1 cut(s)	1456
PfeI	GAWTC	3 cut(s)	452, 548, 1179
PkrI	GCNGC	2 cut(s)	151, 301
Ppu21I	YACGTR	1 cut(s)	606
PpuMI	RGGWCCY	2 cut(s)	310, 1227
Psp5II	RGGWCCY	2 cut(s)	310, 1227
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	3 cut(s)	157, 411, 1110
PspPI	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
PspPPI	RGGWCCY	2 cut(s)	310, 1227
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	6 cut(s)	121, 242, 434, 652, 751, 1164
RsaNI	GTAC	6 cut(s)	120, 241, 433, 651, 750, 1163
RseI	CAYNNNNRTG	1 cut(s)	1248
SaqAI	TTAA	2 cut(s)	477, 1437
SatI	GCNGC	2 cut(s)	150, 300
Sau3AI	GATC	3 cut(s)	409, 763, 1141
Sau96I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
ScrFI	CCNGG	2 cut(s)	403, 1077
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	418, 648
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	3 cut(s)	139, 310, 1227
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SpeI	ACTAGT	1 cut(s)	1316
Sse9I	AATT	9 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1282, 1448
SsiI	CCGC	2 cut(s)	150, 346
SspI	AATATT	2 cut(s)	880, 985
SspMI	CTAG	1 cut(s)	1317
StyD4I	CCNGG	2 cut(s)	401, 1075
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
TaiI	ACGT	4 cut(s)	136, 423, 608, 1293
TaqI	TCGA	4 cut(s)	183, 223, 235, 386
TasI	AATT	9 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1282, 1448
TatI	WGTACW	2 cut(s)	650, 1162
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	452, 548, 1179
Tru1I	TTAA	2 cut(s)	477, 1437
Tru9I	TTAA	2 cut(s)	477, 1437
TscAI	CASTG	2 cut(s)	1189, 1270
TseFI	GTSAC	2 cut(s)	676, 737
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	676, 737
TspDTI	ATGAA	7 cut(s)	103, 479, 540, 872, 948, 1058, 1421
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	1189, 1270
VpaK11BI	GGWCC	3 cut(s)	139, 310, 1227
XapI	RAATTY	6 cut(s)	572, 945, 1056, 1068, 1282, 1448
XceI	RCATGY	1 cut(s)	1120
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	1 cut(s)	1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.