RchiOBHm_Chr3g0459211

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001723
Physical Location & Seq
Forward (+)
7698180 .. 7700874
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42580

Sequence Viewer

Length: 927 bp
ATGGGGGTGCCCCCCAACCTAAAACCTCTGCAAAACCCAAAATCTCTCACATTCTCACCCCCTCCAAGTTTTCTGTCATCTTTCTCCACTTTCCATTCCACTCCAACTCTCCAAGAATCAAGCATGGCCATAATCCAAACCCACTTCACCTCCAAGCTCCCCCAATTCCCCAACTCCATTCTCAGCTCCGGAAAAGACCCAACTTTGAAACCCAATTTTGCTCATTTCACCCGTACAAAACCTCCACGTTTGGTCATCAGGGCCGCCGGAACTGATTACTATAAGACCCTCAACCTCCACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAGAAGTTCAAAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAGAGAACTGCATATGATCGCTCTGGTGATGCAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCTATGGAACGGGTGAATCAGGAGGCATTAACGTCAATGTCAAGTCCACTGGAAGCCAGATATATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTCGTTTGCTGAGGCATTTGAAACTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTGCTGGGAGTGGAGCTGAATCTGATAACTGCATCAAATCATGTACTGGTTCTGGAGGAACAGGAGGACTCGGCACTGTGATAGCTACTGCCGTGACAGTATCAATCATTCTGTTTTTGGGACTTGCAGCCATTATTCCAGGGAAAAGAAGTTGCGTTGTGAAGATGATTGCAAAGCAGGTGATGGCATACAAGTCTGGTACATCTGCTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

308

Amino Acids

32.85

Weight (kDa)

8.76

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 92 - 153 3.9e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 600
AfaI GTAC 3 cut(s) 235, 754, 910
AgsI TTSAA 6 cut(s) 208, 316, 370, 400, 513, 653
AjnI CCWGG 1 cut(s) 847
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 6 cut(s) 157, 186, 343, 386, 725, 794
AluI AGCT 6 cut(s) 157, 186, 343, 386, 725, 794
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 2 cut(s) 126, 261
ApeKI GCWGC 2 cut(s) 413, 836
ApoI RAATTY 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 261, 424
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 6 cut(s) 48, 139, 220, 479, 557, 901
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 7
BbvCI CCTCAGC 2 cut(s) 387, 642
BbvI GCAGC 2 cut(s) 400, 848
BccI CCATC 1 cut(s) 886
BceAI ACGGC 1 cut(s) 785
BciT130I CCWGG 1 cut(s) 849
BcnI CCSGG 1 cut(s) 517
BfmI CTRYAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 877
BisI GCNGC 3 cut(s) 264, 414, 837
BlsI GCNGC 3 cut(s) 265, 415, 838
Bme1390I CCNGG 2 cut(s) 517, 849
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 261, 424
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 517, 849
BmsI GCATC 3 cut(s) 460, 694, 750
BpmI CTGGAG 2 cut(s) 402, 783
Bpu10I CCTNAGC 2 cut(s) 387, 642
BpuMI CCSGG 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 516, 848
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 226, 256
Bse1I ACTGG 2 cut(s) 586, 760
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 2 cut(s) 516, 848
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 196, 378, 633
BseNI ACTGG 2 cut(s) 586, 760
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 2 cut(s) 400, 848
BseYI CCCAGC 1 cut(s) 713
BshFI GGCC 2 cut(s) 128, 263
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 3 cut(s) 189, 267, 516
BslFI GGGAC 1 cut(s) 843
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 2 cut(s) 128, 263
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 1 cut(s) 264
BspANI GGCC 2 cut(s) 128, 263
BspCNI CTCAG 3 cut(s) 195, 379, 634
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 7
BsrI ACTGG 2 cut(s) 586, 760
BssECI CCNNGG 2 cut(s) 516, 848
BssMI GATC 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 3 cut(s) 354, 787, 808
Bst6I CTCTTC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 704
BstC8I GCNNGC 2 cut(s) 345, 475
BstDEI CTNAG 3 cut(s) 182, 387, 642
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 460
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 1 cut(s) 849
BstNSI RCATGY 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 515, 847
BstSFI CTRYAG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 400, 848
BsuRI GGCC 2 cut(s) 128, 263
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 579, 783
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 2 cut(s) 345, 475
Cfr13I GGNCC 2 cut(s) 261, 424
Csp6I GTAC 3 cut(s) 234, 753, 909
CviAII CATG 3 cut(s) 124, 699, 750
CviQI GTAC 3 cut(s) 234, 753, 909
DdeI CTNAG 3 cut(s) 182, 387, 642
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
DraI TTTAAA 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 847
FaeI CATG 3 cut(s) 127, 702, 753
FaqI GGGAC 1 cut(s) 843
FatI CATG 3 cut(s) 123, 698, 749
FauNDI CATATG 2 cut(s) 418, 454
Fnu4HI GCNGC 3 cut(s) 264, 414, 837
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 264, 414, 837
GluI GCNGC 3 cut(s) 264, 414, 837
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 2 cut(s) 402, 783
HaeIII GGCC 2 cut(s) 128, 263
HapII CCGG 3 cut(s) 189, 267, 516
Hin1II CATG 3 cut(s) 127, 702, 753
HinfI GANTC 6 cut(s) 116, 377, 548, 677, 728, 777
HpaII CCGG 3 cut(s) 189, 267, 516
HphI GGTGA 6 cut(s) 48, 139, 220, 479, 557, 901
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 2 cut(s) 433, 733
Hpy188III TCNNGA 5 cut(s) 189, 362, 381, 552, 762
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 354, 787, 808
HpyCH4IV ACGT 2 cut(s) 247, 564
HpyCH4V TGCA 7 cut(s) 31, 416, 452, 473, 741, 836, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 3 cut(s) 182, 387, 642
HpySE526I ACGT 2 cut(s) 247, 564
Hsp92II CATG 3 cut(s) 127, 702, 753
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 5 cut(s) 162, 191, 383, 671, 722
Lsp1109I GCAGC 2 cut(s) 400, 848
LweI GCATC 3 cut(s) 460, 694, 750
MaeII ACGT 2 cut(s) 247, 564
MaeIII GTNAC 2 cut(s) 520, 802
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 2 cut(s) 454, 883
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 164, 214, 600, 624
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 371, 771
MmeI TCCRAC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 128
MroI TCCGGA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 128
MseI TTAA 3 cut(s) 561, 609, 627
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 3 cut(s) 189, 267, 516
MspR9I CCNGG 2 cut(s) 517, 849
MvaI CCWGG 1 cut(s) 849
MwoI GCNNNNNNNGC 1 cut(s) 704
NciI CCSGG 1 cut(s) 517
NdeI CATATG 2 cut(s) 418, 454
NdeII GATC 1 cut(s) 457
NlaIII CATG 3 cut(s) 127, 702, 753
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 2 cut(s) 520, 802
NspI RCATGY 1 cut(s) 702
PaqCI CACCTGC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 116, 548, 677, 728
PkrI GCNGC 3 cut(s) 265, 415, 838
PleI GAGTC 2 cut(s) 371, 771
PpsI GAGTC 2 cut(s) 371, 771
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 847
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 261, 424
PspPPI RGGWCCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 235, 754, 910
RsaNI GTAC 3 cut(s) 234, 753, 909
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 561, 609, 627
SatI GCNGC 3 cut(s) 264, 414, 837
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 2 cut(s) 261, 424
SchI GAGTC 2 cut(s) 371, 771
ScrFI CCNGG 2 cut(s) 517, 849
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 3 cut(s) 460, 694, 750
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 4 cut(s) 164, 214, 600, 624
SsiI CCGC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 515, 847
TaaI ACNGT 3 cut(s) 354, 787, 808
TaiI ACGT 2 cut(s) 250, 567
TaqI TCGA 1 cut(s) 337
TasI AATT 4 cut(s) 164, 214, 600, 624
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 4 cut(s) 116, 548, 677, 728
Tru1I TTAA 3 cut(s) 561, 609, 627
Tru9I TTAA 3 cut(s) 561, 609, 627
TscAI CASTG 2 cut(s) 586, 790
TseFI GTSAC 2 cut(s) 520, 802
TseI GCWGC 2 cut(s) 413, 836
Tsp45I GTSAC 2 cut(s) 520, 802
TspDTI ATGAA 1 cut(s) 612
TspRI CASTG 2 cut(s) 586, 790
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 1 cut(s) 600
XceI RCATGY 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.