Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457643.1

Orthogroup ID

OG0001723

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 985

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

atgcccataattcaaacccactcaccttactctttcagctcctccactcgcagaccctcttccacattcttcaccggaaaagacccaactttgaaacccaatttcgctcctttcatccgtacaaaacctccacgtttggtcctcagggccgccggaaccgattactataagaccctcaacctcgacagaaatgcaaccctgaaggagataaagacatcttatcgaaagctcgctcgacagtaccatcctgatttgaacaagggctctggagctgaagacaagttcaaagagattagtgctgcatatgaggtcctatcagatgaggagaaaagagcttcgtatgaccgctttggcgaggcaggcttacagggagaatatggttcttcaaacatgggttcagccggggtggatccttttgacgtttttgatgcgtactttgggggaaggggtgaatcaggaggcatgagcttcaattttaacttcaatacgccaaactcaggaaatcagggccttgacattcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

9.05

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17830
fragaria_vesca	FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920
malus_domestica	MD14G1238500.v1.1
prunus_persica	Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1
pyrus_communis	pycom06g20580 pycom14g19960
rosa_chinensis	RchiOBHm_Chr3g0459211 RchiOBHm_Chr7g0178061
rosa_laevigata	RLG00000005475 RLG00000025103
rosa_multiflora	Rmu_co8457643.1_g000001 Rmu_sc0002435.1_g000013 Rmu_sc0014208.1_g000009 Rmu_sc0025216.1_g000001 Rmu_sc0025217.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275210 Rroxscaffold_6G00420410
rosa_rugosa	Rorug03G0034200 Rorug06G0413200
rosa_samantha	Rh3AG092300 Rh3BG095100 Rh3CG096200 Rh3DG096000 Rh7AG012400 Rh7BG012300 Rh7CG012300 Rh7DG012600
rosa_wichuraiana	Rw3G007920 Rw7G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 346
AclWI	GGATC	2 cut(s)	404, 417
AcuI	CTGAAG	2 cut(s)	221, 294
AfaI	GTAC	3 cut(s)	121, 242, 434
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	14, 94, 256, 286, 387, 472, 484
AluBI	AGCT	5 cut(s)	39, 229, 272, 335, 468
AluI	AGCT	5 cut(s)	39, 229, 272, 335, 468
AlwI	GGATC	2 cut(s)	404, 417
AoxI	GGCC	2 cut(s)	147, 508
ApeKI	GCWGC	1 cut(s)	299
AspS9I	GGNCC	4 cut(s)	139, 147, 310, 508
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	15, 64, 461
AvaII	GGWCC	2 cut(s)	139, 310
AxyI	CCTNAGG	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcnI	CCSGG	1 cut(s)	403
BisI	GCNGC	2 cut(s)	150, 300
BlsI	GCNGC	2 cut(s)	151, 301
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	139, 310
BmgT120I	GGNCC	4 cut(s)	139, 147, 310, 508
BmiI	GGNNCC	2 cut(s)	157, 411
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse21I	CCTNAGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	114, 244
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	157, 510
BseRI	GAGGAG	2 cut(s)	31, 338
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	149, 510
BsiSI	CCGG	3 cut(s)	75, 153, 402
BslI	CCNNNNNNNGG	1 cut(s)	497
BsnI	GGCC	2 cut(s)	149, 510
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	2 cut(s)	150, 346
BspANI	GGCC	2 cut(s)	149, 510
BspCNI	CTCAG	2 cut(s)	156, 509
BspLI	GGNNCC	2 cut(s)	157, 411
BspPI	GGATC	2 cut(s)	404, 417
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	231, 361
BstDEI	CTNAG	2 cut(s)	143, 496
BstF5I	GGATG	2 cut(s)	114, 244
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	149, 510
BtsCI	GGATG	2 cut(s)	114, 244
Cac8I	GCNNGC	2 cut(s)	231, 361
Cfr13I	GGNCC	4 cut(s)	139, 147, 310, 508
Csp6I	GTAC	3 cut(s)	120, 241, 433
CviAII	CATG	2 cut(s)	391, 463
CviQI	GTAC	3 cut(s)	120, 241, 433
DdeI	CTNAG	2 cut(s)	143, 496
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	139, 310
Eco57I	CTGAAG	2 cut(s)	221, 294
Eco81I	CCTNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	310, 508
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	2 cut(s)	394, 466
FaiI	YATR	8 cut(s)	8, 168, 304, 306, 342, 378, 392, 464
FatI	CATG	2 cut(s)	390, 462
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	150, 300
FokI	GGATG	2 cut(s)	101, 231
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	150, 300
GluI	GCNGC	2 cut(s)	150, 300
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	149, 510
HapII	CCGG	3 cut(s)	75, 153, 402
Hin1II	CATG	2 cut(s)	394, 466
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	3 cut(s)	75, 153, 402
HphI	GGTGA	3 cut(s)	15, 64, 461
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	248, 267, 456, 498
HpyAV	CCTTC	2 cut(s)	196, 438
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	2 cut(s)	133, 420
HpyCH4V	TGCA	2 cut(s)	194, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	2 cut(s)	143, 496
HpySE526I	ACGT	2 cut(s)	133, 420
Hsp92II	CATG	2 cut(s)	394, 466
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	3 cut(s)	44, 112, 269
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	2 cut(s)	133, 420
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	4 cut(s)	51, 61, 287, 375
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	9, 100, 472
MseI	TTAA	1 cut(s)	477
MspI	CCGG	3 cut(s)	75, 153, 402
MspR9I	CCNGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	2 cut(s)	394, 466
NlaIV	GGNNCC	2 cut(s)	157, 411
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	151, 301
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	157, 411
PspPI	GGNCC	4 cut(s)	139, 147, 310, 508
PspPPI	RGGWCCY	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	3 cut(s)	121, 242, 434
RsaNI	GTAC	3 cut(s)	120, 241, 433
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	150, 300
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	4 cut(s)	139, 147, 310, 508
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	418
SinI	GGWCC	2 cut(s)	139, 310
Sse9I	AATT	3 cut(s)	9, 100, 472
SsiI	CCGC	2 cut(s)	150, 346
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	2 cut(s)	136, 423
TaqI	TCGA	3 cut(s)	183, 223, 235
TasI	AATT	3 cut(s)	9, 100, 472
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	139, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.