Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001723

Physical Location & Seq

Genomic Coordinates Reverse (-)

23544957 .. 23547612

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCACGTAAGTTGTTATCTCAAAATAGAAATGAATCCCAGCAAGTCAATTATCACCTACTATTTTTGGTGCTCCATCAGGCTTCTTCTTCTTCTTCTTCTTCTTCACGGAAATCCCTTCACCCAAAAACCTCTGCAAAACCCCCAACACCTCCCAATCTCCATAACCCATCTCCACCGTCAATTTTCAATCTCAAAAATCGAAGTATGCCCGTGACCCAAAGCACCTGCACCTCCAATTTCCCGCCAAATCCCAACTCTGCGGTTCCACTTCCGCCCTATTCTTTGAGCTGCTCCGCCCTCAGCTCCGCCGCTTCTACATTCTTCACCAGAAGTAAAAACCCAATCTTCAAATCCAATTCAGCTCCTCTCCTCCGCGCCAAGCCCCAGCGCGGCTCTCGGTTAATCGCCAGTGCCGCGGGAACCGATTACTATAAGACCCTTAACGTCCTCAGAACTGCCACGCTGCAGGAGATCAAGTCCGCCTACCGAAAGAAATTGAAGTTTCTTGTGTTGAGATGTGATGACTGTGGTGGAACAGGTGCTAAATCTGATAAAGGAATAAAATCATGTACTGGTTGTGGAGGAAGAGGAGGGGTGATGAAAACTCAGAAAACACCATTTGGAATGATATCGCAGGTATCAACCTGTTCAAAATGTGGTGGTGATGGTATAATAATCACTGATCCTTGCCAGAGATGCAGTGGTGACGGACAAGTGCAGTCAACAAGAACTACGAACGTGATCATCCCAGTTGGTGTTAATGATGGATCCACAATGCAAATTCAAGGAGAGGGGAATTTAAGGGCAGGGGTAAAGCTGGTGATGTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

279

Amino Acids

29.63

Weight (kDa)

10.08

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17830
fragaria_vesca	FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920
malus_domestica	MD14G1238500.v1.1
prunus_persica	Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1
pyrus_communis	pycom06g20580 pycom14g19960
rosa_chinensis	RchiOBHm_Chr3g0459211 RchiOBHm_Chr7g0178061
rosa_laevigata	RLG00000005475 RLG00000025103
rosa_multiflora	Rmu_co8457643.1_g000001 Rmu_sc0002435.1_g000013 Rmu_sc0014208.1_g000009 Rmu_sc0025216.1_g000001 Rmu_sc0025217.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275210 Rroxscaffold_6G00420410
rosa_rugosa	Rorug03G0034200 Rorug06G0413200
rosa_samantha	Rh3AG092300 Rh3BG095100 Rh3CG096200 Rh3DG096000 Rh7AG012400 Rh7BG012300 Rh7CG012300 Rh7DG012600
rosa_wichuraiana	Rw3G007920 Rw7G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	2 cut(s)	236, 628
AccI	GTMKAC	1 cut(s)	830
AccII	CGCG	3 cut(s)	378, 393, 419
AclWI	GGATC	3 cut(s)	680, 765, 778
AcsI	RAATTY	2 cut(s)	783, 799
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	190, 352, 502, 654, 788
AluBI	AGCT	4 cut(s)	291, 306, 365, 820
AluI	AGCT	4 cut(s)	291, 306, 365, 820
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	3 cut(s)	680, 765, 778
ApeKI	GCWGC	2 cut(s)	291, 466
ApoI	RAATTY	2 cut(s)	783, 799
AspLEI	GCGC	2 cut(s)	380, 393
AsuHPI	GGTGA	7 cut(s)	47, 113, 319, 610, 677, 719, 835
BamHI	GGATCC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	278, 453
BccI	CCATC	4 cut(s)	84, 178, 662, 761
BclI	TGATCA	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	236, 628
BisI	GCNGC	5 cut(s)	292, 312, 394, 417, 467
BlsI	GCNGC	5 cut(s)	293, 313, 395, 418, 468
BmiI	GGNNCC	3 cut(s)	267, 424, 772
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	3 cut(s)	411, 580, 752
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	747
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	316, 466, 623
BseNI	ACTGG	3 cut(s)	411, 580, 752
BseRI	GAGGAG	3 cut(s)	357, 362, 606
BseXI	GCAGC	2 cut(s)	278, 453
BseYI	CCCAGC	2 cut(s)	39, 387
BsgI	GTGCAG	2 cut(s)	214, 740
Bsh1236I	CGCG	3 cut(s)	378, 393, 419
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	474, 685, 744, 770
BspCNI	CTCAG	3 cut(s)	315, 465, 622
BspFNI	CGCG	3 cut(s)	378, 393, 419
BspLI	GGNNCC	3 cut(s)	267, 424, 772
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	2 cut(s)	236, 628
BspPI	GGATC	3 cut(s)	680, 765, 778
BsrI	ACTGG	3 cut(s)	411, 580, 752
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	474, 685, 744, 770
Bst4CI	ACNGT	2 cut(s)	180, 530
Bst6I	CTCTTC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	302, 452, 609
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	3 cut(s)	378, 393, 419
BstHHI	GCGC	2 cut(s)	380, 393
BstKTI	GATC	4 cut(s)	477, 688, 747, 773
BstMBI	GATC	4 cut(s)	474, 685, 744, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 699
BstSFI	CTRYAG	1 cut(s)	467
BstUI	CGCG	3 cut(s)	378, 393, 419
BstV1I	GCAGC	2 cut(s)	278, 453
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	3 cut(s)	418, 681, 709
BveI	ACCTGC	2 cut(s)	236, 628
CfoI	GCGC	2 cut(s)	380, 393
Cfr42I	CCGCGG	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	1 cut(s)	570
CviJI	RGCY	7 cut(s)	83, 291, 306, 365, 385, 396, 820
CviKI_1	RGCY	7 cut(s)	83, 291, 306, 365, 385, 396, 820
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	302, 452, 609
DpnI	GATC	4 cut(s)	476, 687, 746, 772
DpnII	GATC	4 cut(s)	474, 685, 744, 770
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	4 cut(s)	264, 286, 298, 472
Eco32I	GATATC	1 cut(s)	633
EcoRV	GATATC	1 cut(s)	633
FaeI	CATG	1 cut(s)	573
FaiI	YATR	6 cut(s)	165, 209, 435, 571, 674, 835
FatI	CATG	1 cut(s)	569
FauI	CCCGC	2 cut(s)	252, 412
FbaI	TGATCA	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	830
Fnu4HI	GCNGC	5 cut(s)	292, 312, 394, 417, 467
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	5 cut(s)	292, 312, 394, 417, 467
GlaI	GCGC	2 cut(s)	379, 392
GluI	GCNGC	5 cut(s)	292, 312, 394, 417, 467
GsaI	CCCAGC	2 cut(s)	43, 391
HhaI	GCGC	2 cut(s)	380, 393
Hin1II	CATG	1 cut(s)	573
Hin6I	GCGC	2 cut(s)	378, 391
HinP1I	GCGC	2 cut(s)	378, 391
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	7 cut(s)	47, 113, 319, 610, 677, 719, 835
Hpy166II	GTNNAC	2 cut(s)	726, 831
Hpy188I	TCNGA	3 cut(s)	455, 553, 612
Hpy8I	GTNNAC	2 cut(s)	726, 831
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	180, 530
HpyCH4IV	ACGT	3 cut(s)	7, 447, 741
HpyCH4V	TGCA	6 cut(s)	137, 231, 469, 702, 721, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 699
HpyF3I	CTNAG	3 cut(s)	302, 452, 609
HpySE526I	ACGT	3 cut(s)	7, 447, 741
Hsp92II	CATG	1 cut(s)	573
HspAI	GCGC	2 cut(s)	378, 391
Ksp22I	TGATCA	1 cut(s)	744
KspI	CCGCGG	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	474, 685, 744, 770
LmnI	GCTCC	4 cut(s)	78, 299, 311, 370
Lsp1109I	GCAGC	2 cut(s)	278, 453
LweI	GCATC	1 cut(s)	689
MaeII	ACGT	3 cut(s)	7, 447, 741
MaeIII	GTNAC	3 cut(s)	3, 214, 707
MalI	GATC	4 cut(s)	476, 687, 746, 772
MboI	GATC	4 cut(s)	474, 685, 744, 770
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	7 cut(s)	49, 183, 238, 358, 497, 783, 799
MseI	TTAA	4 cut(s)	404, 444, 762, 803
MspA1I	CMGCKG	1 cut(s)	419
MvnI	CGCG	3 cut(s)	378, 393, 419
MwoI	GCNNNNNNNGC	2 cut(s)	416, 699
NdeII	GATC	4 cut(s)	474, 685, 744, 770
NlaIII	CATG	1 cut(s)	573
NlaIV	GGNNCC	3 cut(s)	267, 424, 772
NmuCI	GTSAC	3 cut(s)	3, 214, 707
PaqCI	CACCTGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	293, 313, 395, 418, 468
Ppu21I	YACGTR	1 cut(s)	8
PspFI	CCCAGC	2 cut(s)	39, 387
PspN4I	GGNNCC	3 cut(s)	267, 424, 772
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	770
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SacII	CCGCGG	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	404, 444, 762, 803
SatI	GCNGC	5 cut(s)	292, 312, 394, 417, 467
Sau3AI	GATC	4 cut(s)	474, 685, 744, 770
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	689
SfcI	CTRYAG	1 cut(s)	467
Sfr303I	CCGCGG	1 cut(s)	420
SgrBI	CCGCGG	1 cut(s)	420
Sse9I	AATT	7 cut(s)	49, 183, 238, 358, 497, 783, 799
TaaI	ACNGT	2 cut(s)	180, 530
TaiI	ACGT	3 cut(s)	10, 450, 744
TaqI	TCGA	1 cut(s)	202
TasI	AATT	7 cut(s)	49, 183, 238, 358, 497, 783, 799
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	3 cut(s)	314, 396, 419
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	404, 444, 762, 803
Tru9I	TTAA	4 cut(s)	404, 444, 762, 803
TscAI	CASTG	3 cut(s)	418, 688, 709
TseFI	GTSAC	3 cut(s)	3, 214, 707
TseI	GCWGC	2 cut(s)	291, 466
Tsp45I	GTSAC	3 cut(s)	3, 214, 707
TspDTI	ATGAA	2 cut(s)	48, 617
TspGWI	ACGGA	2 cut(s)	124, 726
TspRI	CASTG	3 cut(s)	418, 688, 709
XapI	RAATTY	2 cut(s)	783, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.