Rh3BG095100

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001723
Physical Location & Seq
Forward (+)
7588100 .. 7590431
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG095100.1

Sequence Viewer

Length: 693 bp
ATGCATGATACGGGTATGTATGGAATAAAGGCTAAAAGAGTGTGGTTATTACTATATCGAGCTATGAGCATGGGGGCCGCCGGAACTGATTACTATAAGACCCTCAACCTCCACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAGAAGTTCAAAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAGAGAACTGCATATGATCGCTCTGGTGATGCAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCTATGGAACGGGTGAATCAGGAGGCATTAACGTCAATGTCAAGTCCACTGGAAGCCAGATATATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTCGTTTGCTGAAGCATTTGAAACTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTGCTGGGAGTGGAGCTGAATCTGATAACTGCATCAAATCATGTACTGGTTCTGGAGGAACAGGAGGACTCGGCACTGTGATAGCTACTGCCGTGACAGTATCAATCATTCTGTTTTTGGGACTTGCAGCCATTATTCCAGGTTCTAGTCTTTACCCTTTTGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

230

Amino Acids

24.39

Weight (kDa)

5.68

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 30 - 91 2.3e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 568
AgsI TTSAA 5 cut(s) 130, 184, 214, 327, 467
AjnI CCWGG 1 cut(s) 661
AloI GAACNNNNNNTCC 2 cut(s) 307, 339
AluBI AGCT 5 cut(s) 62, 157, 200, 539, 608
AluI AGCT 5 cut(s) 62, 157, 200, 539, 608
AoxI GGCC 2 cut(s) 75, 685
ApeKI GCWGC 2 cut(s) 227, 650
ApoI RAATTY 1 cut(s) 414
AspS9I GGNCC 2 cut(s) 75, 238
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 293, 371
AvaII GGWCC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 214, 662
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 2 cut(s) 164, 689
BisI GCNGC 3 cut(s) 78, 228, 651
BlsI GCNGC 3 cut(s) 79, 229, 652
Bme1390I CCNGG 2 cut(s) 331, 663
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 75, 238
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 331, 663
BmsI GCATC 3 cut(s) 274, 508, 564
BpmI CTGGAG 2 cut(s) 216, 597
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 400, 574
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 400, 574
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 214, 662
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 2 cut(s) 77, 687
BsiSI CCGG 2 cut(s) 81, 330
BslFI GGGAC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 2 cut(s) 77, 687
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 77, 687
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 400, 574
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 3 cut(s) 168, 601, 622
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 159, 289
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 329, 661
BstSFI CTRYAG 2 cut(s) 164, 689
BstV1I GCAGC 2 cut(s) 214, 662
BsuRI GGCC 2 cut(s) 77, 687
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 393, 597
Cac8I GCNNGC 2 cut(s) 159, 289
Cfr13I GGNCC 2 cut(s) 75, 238
Csp6I GTAC 1 cut(s) 567
CviAII CATG 4 cut(s) 5, 70, 513, 564
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 661
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 73, 516, 567
FaqI GGGAC 1 cut(s) 657
FatI CATG 4 cut(s) 4, 69, 512, 563
FauNDI CATATG 2 cut(s) 232, 268
Fnu4HI GCNGC 3 cut(s) 78, 228, 651
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 78, 228, 651
FspBI CTAG 1 cut(s) 669
GluI GCNGC 3 cut(s) 78, 228, 651
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 216, 597
HaeIII GGCC 2 cut(s) 77, 687
HapII CCGG 2 cut(s) 81, 330
Hin1II CATG 4 cut(s) 8, 73, 516, 567
HinfI GANTC 5 cut(s) 191, 362, 491, 542, 591
HpaII CCGG 2 cut(s) 81, 330
HphI GGTGA 2 cut(s) 293, 371
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 2 cut(s) 247, 547
Hpy188III TCNNGA 4 cut(s) 176, 195, 366, 576
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 168, 601, 622
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 6 cut(s) 4, 230, 266, 287, 555, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 4 cut(s) 8, 73, 516, 567
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 3 cut(s) 197, 485, 536
Lsp1109I GCAGC 2 cut(s) 214, 662
LweI GCATC 3 cut(s) 274, 508, 564
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 334, 616
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 1 cut(s) 268
MluCI AATT 2 cut(s) 414, 438
MlyI GAGTC 2 cut(s) 185, 585
MnlI CCTC 8 cut(s) 113, 119, 196, 229, 362, 502, 572, 581
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 375, 423, 441
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 2 cut(s) 81, 330
MspR9I CCNGG 2 cut(s) 331, 663
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 1 cut(s) 518
NciI CCSGG 1 cut(s) 331
NdeI CATATG 2 cut(s) 232, 268
NdeII GATC 1 cut(s) 271
NlaIII CATG 4 cut(s) 8, 73, 516, 567
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 2 cut(s) 334, 616
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 516
PfeI GAWTC 3 cut(s) 362, 491, 542
PkrI GCNGC 3 cut(s) 79, 229, 652
PleI GAGTC 2 cut(s) 185, 585
PpsI GAGTC 2 cut(s) 185, 585
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 75, 238
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 3 cut(s) 375, 423, 441
SatI GCNGC 3 cut(s) 78, 228, 651
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 75, 238
SchI GAGTC 2 cut(s) 185, 585
ScrFI CCNGG 2 cut(s) 331, 663
SfaNI GCATC 3 cut(s) 274, 508, 564
SfcI CTRYAG 2 cut(s) 164, 689
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 414, 438
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 329, 661
TaaI ACNGT 3 cut(s) 168, 601, 622
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 58, 151
TasI AATT 2 cut(s) 414, 438
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 3 cut(s) 362, 491, 542
Tru1I TTAA 3 cut(s) 375, 423, 441
Tru9I TTAA 3 cut(s) 375, 423, 441
TscAI CASTG 2 cut(s) 400, 604
TseFI GTSAC 2 cut(s) 334, 616
TseI GCWGC 2 cut(s) 227, 650
Tsp45I GTSAC 2 cut(s) 334, 616
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 2 cut(s) 400, 604
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 516
XspI CTAG 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.