Rw3G007920

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001723
Physical Location & Seq
Forward (+)
7376869 .. 7379185
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007920.1

Sequence Viewer

Length: 804 bp
ATGGCCATAATCCAAACCCACTTCACCTCCAAGCTCCCCCAATTCCCCAACTCCATTCTCAGCTCCGGAAAAAACCCAACTTTGAAACCCAATTTCGCTCATTTCACCCGTACAAAACCTCCACGTTTGGTCATCAGGGCCGCTGGAACTGATTACTATAAGACCCTCAACCTCCACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAGAAGTTCAAAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAGAGAACTGCATATGATCGCTCTGGTGATGCAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCCATGGAACGGGTGAATCGGGAGGCATTAACGTCAATGTCAAGTCCACCGGAAGCCAGATATATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTTGTTTGCTGAGGCATTTGAAACTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTGCTGGGAGTGGAGCTGAATCTGATAACTGCATCAAATCATGTACTGGTTCTGGAGGAACAGGAGGACTCGGCGCTGTGATAGCTACTGCCGTGACAGTATCAATCATTCTGTTTTTGGGACTTGCAGCCATTATTCCAGGGAAAAGAAGTTGCGTTGTGAAGATGATTGCAAAGCAGGAGATGGCATACAAGTCTGGTACATCTGCTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

267

Amino Acids

28.44

Weight (kDa)

8.63

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 51 - 112 3e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 477
AfaI GTAC 3 cut(s) 112, 631, 787
AfiI CCNNNNNNNGG 1 cut(s) 418
AgsI TTSAA 6 cut(s) 85, 193, 247, 277, 390, 530
AjnI CCWGG 1 cut(s) 724
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 6 cut(s) 34, 63, 220, 263, 602, 671
AluI AGCT 6 cut(s) 34, 63, 220, 263, 602, 671
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 2 cut(s) 3, 138
ApeKI GCWGC 2 cut(s) 290, 713
ApoI RAATTY 1 cut(s) 477
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 138, 301
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 4 cut(s) 16, 97, 356, 434
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 2 cut(s) 264, 519
BbvI GCAGC 2 cut(s) 277, 725
BccI CCATC 1 cut(s) 763
BceAI ACGGC 1 cut(s) 662
BciT130I CCWGG 1 cut(s) 726
BcnI CCSGG 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 663
BisI GCNGC 3 cut(s) 141, 291, 714
BlsI GCNGC 3 cut(s) 142, 292, 715
Bme1390I CCNGG 2 cut(s) 394, 726
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 138, 301
BmrFI CCNGG 2 cut(s) 394, 726
BmsI GCATC 3 cut(s) 337, 571, 627
BpmI CTGGAG 2 cut(s) 279, 660
Bpu10I CCTNAGC 2 cut(s) 264, 519
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 393, 412, 725
BsaWI WCCGGW 2 cut(s) 65, 458
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 393, 412, 725
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 3 cut(s) 73, 255, 510
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 277, 725
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 5, 140
BsiSI CCGG 3 cut(s) 66, 393, 459
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 2 cut(s) 5, 140
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 5, 140
BspCNI CTCAG 3 cut(s) 72, 256, 511
BspEI TCCGGA 1 cut(s) 65
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 393, 412, 725
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 231, 685
Bst6I CTCTTC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 222, 352
BstDEI CTNAG 3 cut(s) 59, 264, 519
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 581, 668
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 392, 724
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 277, 725
BsuRI GGCC 2 cut(s) 5, 140
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 222, 352
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 138, 301
Csp6I GTAC 3 cut(s) 111, 630, 786
CviAII CATG 3 cut(s) 413, 576, 627
CviQI GTAC 3 cut(s) 111, 630, 786
DdeI CTNAG 3 cut(s) 59, 264, 519
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 3 cut(s) 416, 579, 630
FaqI GGGAC 1 cut(s) 720
FatI CATG 3 cut(s) 412, 575, 626
FauNDI CATATG 2 cut(s) 295, 331
Fnu4HI GCNGC 3 cut(s) 141, 291, 714
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 141, 291, 714
GlaI GCGC 1 cut(s) 661
GluI GCNGC 3 cut(s) 141, 291, 714
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 2 cut(s) 279, 660
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 2 cut(s) 5, 140
HapII CCGG 3 cut(s) 66, 393, 459
HhaI GCGC 1 cut(s) 662
Hin1II CATG 3 cut(s) 416, 579, 630
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 5 cut(s) 254, 425, 554, 605, 654
HpaII CCGG 3 cut(s) 66, 393, 459
HphI GGTGA 4 cut(s) 16, 97, 356, 434
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 2 cut(s) 310, 610
Hpy188III TCNNGA 5 cut(s) 66, 239, 258, 429, 639
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 231, 685
HpyCH4IV ACGT 2 cut(s) 124, 441
HpyCH4V TGCA 6 cut(s) 293, 329, 350, 618, 713, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 668
HpyF3I CTNAG 3 cut(s) 59, 264, 519
HpySE526I ACGT 2 cut(s) 124, 441
Hsp92II CATG 3 cut(s) 416, 579, 630
HspAI GCGC 1 cut(s) 660
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 5 cut(s) 39, 68, 260, 548, 599
Lsp1109I GCAGC 2 cut(s) 277, 725
LweI GCATC 3 cut(s) 337, 571, 627
MaeII ACGT 2 cut(s) 124, 441
MaeIII GTNAC 2 cut(s) 397, 679
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 331, 760
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 41, 91, 477, 501
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 248, 648
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 438, 486, 504
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 66, 393, 459
MspR9I CCNGG 2 cut(s) 394, 726
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 581, 668
NciI CCSGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 2 cut(s) 295, 331
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 416, 579, 630
NmeAIII GCCGAG 1 cut(s) 636
NmuCI GTSAC 2 cut(s) 397, 679
NspI RCATGY 1 cut(s) 579
PfeI GAWTC 3 cut(s) 425, 554, 605
PkrI GCNGC 3 cut(s) 142, 292, 715
PleI GAGTC 2 cut(s) 248, 648
PpsI GAGTC 2 cut(s) 248, 648
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 724
PspPI GGNCC 2 cut(s) 138, 301
PspPPI RGGWCCY 1 cut(s) 301
RsaI GTAC 3 cut(s) 112, 631, 787
RsaNI GTAC 3 cut(s) 111, 630, 786
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 438, 486, 504
SatI GCNGC 3 cut(s) 141, 291, 714
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 138, 301
SchI GAGTC 2 cut(s) 248, 648
ScrFI CCNGG 2 cut(s) 394, 726
SfaNI GCATC 3 cut(s) 337, 571, 627
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 4 cut(s) 41, 91, 477, 501
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 392, 724
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 2 cut(s) 231, 685
TaiI ACGT 2 cut(s) 127, 444
TaqI TCGA 1 cut(s) 214
TasI AATT 4 cut(s) 41, 91, 477, 501
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 425, 554, 605
Tru1I TTAA 3 cut(s) 438, 486, 504
Tru9I TTAA 3 cut(s) 438, 486, 504
TseFI GTSAC 2 cut(s) 397, 679
TseI GCWGC 2 cut(s) 290, 713
Tsp45I GTSAC 2 cut(s) 397, 679
TspDTI ATGAA 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 477
XceI RCATGY 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.