Rh3CG096200

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001723
Physical Location & Seq
Forward (+)
7552088 .. 7555023
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG096200.1

Sequence Viewer

Length: 756 bp
ATGGCCATAATCCAAACCCACTTCACCTCCAAGCTCCCCCAATTCCCCAACTCCATTCTCAGCTCCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCATTTCACCCGTACAAAACCTCCACGTTTGGTCATCAGGGCCGCCGGAACTGATTACAATAAGACCCTCAACCTCCACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAGAAGTTCAAAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGAACTGCATATGATCGCTCTGGTGATGCAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCTATGGAATGGGTGAATCGGGAGGCATTAACGTCAATCTCAAGTCCACTGGAAGCCAGATATATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTTGTTTGCTGAGGCATTTGAAACTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTACTGGGAGTGGAGCTGAATCTGATAACTGCATCAAATCATGTACTGGTTCTGGAGGAACAGGAGGGCTCGGCGCTGTGATAGCTACGGCCGTGAGAGTATCAATCATTCTGTTTTTGGGACTTGCAGCCATTATTCCAGGTTCTAGTCTTTACCCTTTTGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

251

Amino Acids

26.77

Weight (kDa)

7.61

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 51 - 112 2.2e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 2 cut(s) 3, 675
AcsI RAATTY 1 cut(s) 477
AfaI GTAC 3 cut(s) 112, 589, 631
AgsI TTSAA 6 cut(s) 85, 193, 247, 277, 390, 530
AjnI CCWGG 1 cut(s) 724
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 6 cut(s) 34, 63, 220, 263, 602, 671
AluI AGCT 6 cut(s) 34, 63, 220, 263, 602, 671
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 4 cut(s) 3, 138, 675, 748
ApeKI GCWGC 2 cut(s) 290, 713
ApoI RAATTY 1 cut(s) 477
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 138, 301
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 4 cut(s) 16, 97, 356, 434
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 657
BbvCI CCTCAGC 2 cut(s) 264, 519
BbvI GCAGC 2 cut(s) 277, 725
BceAI ACGGC 2 cut(s) 662, 690
BciT130I CCWGG 1 cut(s) 726
BcnI CCSGG 1 cut(s) 394
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 2 cut(s) 227, 752
BfoI RGCGCY 1 cut(s) 663
BisI GCNGC 3 cut(s) 141, 291, 714
BlsI GCNGC 3 cut(s) 142, 292, 715
Bme1390I CCNGG 2 cut(s) 394, 726
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 138, 301
BmrFI CCNGG 2 cut(s) 394, 726
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 337, 571, 627
BmuI ACTGGG 1 cut(s) 600
BpmI CTGGAG 2 cut(s) 279, 660
Bpu10I CCTNAGC 2 cut(s) 264, 519
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 103, 133
Bse1I ACTGG 3 cut(s) 463, 595, 637
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 73, 255, 510
BseNI ACTGG 3 cut(s) 463, 595, 637
BseRI GAGGAG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 675
BseXI GCAGC 2 cut(s) 277, 725
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 4 cut(s) 5, 140, 677, 750
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 3 cut(s) 66, 144, 393
BslFI GGGAC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 4 cut(s) 5, 140, 677, 750
Bsp1286I GDGCHC 1 cut(s) 657
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 141
BspANI GGCC 4 cut(s) 5, 140, 677, 750
BspCNI CTCAG 3 cut(s) 72, 256, 511
BspEI TCCGGA 1 cut(s) 65
BsrI ACTGG 3 cut(s) 463, 595, 637
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 222, 352
BstDEI CTNAG 3 cut(s) 59, 264, 519
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 2 cut(s) 581, 668
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 392, 724
BstSFI CTRYAG 2 cut(s) 227, 752
BstV1I GCAGC 2 cut(s) 277, 725
BstZI CGGCCG 1 cut(s) 675
BsuRI GGCC 4 cut(s) 5, 140, 677, 750
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 222, 352
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 138, 301
Csp6I GTAC 3 cut(s) 111, 588, 630
CviAII CATG 2 cut(s) 576, 627
CviQI GTAC 3 cut(s) 111, 588, 630
DdeI CTNAG 3 cut(s) 59, 264, 519
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 487
EaeI YGGCCR 2 cut(s) 3, 675
EagI CGGCCG 1 cut(s) 675
EclXI CGGCCG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 301
Eco52I CGGCCG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 657
FaeI CATG 2 cut(s) 579, 630
FaqI GGGAC 1 cut(s) 720
FatI CATG 2 cut(s) 575, 626
FauNDI CATATG 2 cut(s) 295, 331
Fnu4HI GCNGC 3 cut(s) 141, 291, 714
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 3 cut(s) 141, 291, 714
FspBI CTAG 1 cut(s) 732
GlaI GCGC 1 cut(s) 661
GluI GCNGC 3 cut(s) 141, 291, 714
GsuI CTGGAG 2 cut(s) 279, 660
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 4 cut(s) 5, 140, 677, 750
HapII CCGG 3 cut(s) 66, 144, 393
HhaI GCGC 1 cut(s) 662
Hin1II CATG 2 cut(s) 579, 630
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 4 cut(s) 254, 425, 554, 605
HpaII CCGG 3 cut(s) 66, 144, 393
HphI GGTGA 4 cut(s) 16, 97, 356, 434
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 2 cut(s) 310, 610
Hpy188III TCNNGA 5 cut(s) 66, 239, 258, 429, 639
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 2 cut(s) 124, 441
HpyCH4V TGCA 5 cut(s) 293, 329, 350, 618, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 668
HpyF3I CTNAG 3 cut(s) 59, 264, 519
HpySE526I ACGT 2 cut(s) 124, 441
Hsp92II CATG 2 cut(s) 579, 630
HspAI GCGC 1 cut(s) 660
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 5 cut(s) 39, 68, 260, 548, 599
Lsp1109I GCAGC 2 cut(s) 277, 725
LweI GCATC 3 cut(s) 337, 571, 627
MaeI CTAG 1 cut(s) 732
MaeII ACGT 2 cut(s) 124, 441
MaeIII GTNAC 1 cut(s) 397
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 657
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 41, 91, 477, 501
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 438, 486, 504
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 66, 144, 393
MspR9I CCNGG 2 cut(s) 394, 726
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 581, 668
NciI CCSGG 1 cut(s) 394
NdeI CATATG 2 cut(s) 295, 331
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 579, 630
NmeAIII GCCGAG 1 cut(s) 636
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 579
PfeI GAWTC 3 cut(s) 425, 554, 605
PkrI GCNGC 3 cut(s) 142, 292, 715
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspPI GGNCC 2 cut(s) 138, 301
PspPPI RGGWCCY 1 cut(s) 301
RsaI GTAC 3 cut(s) 112, 589, 631
RsaNI GTAC 3 cut(s) 111, 588, 630
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 438, 486, 504
SatI GCNGC 3 cut(s) 141, 291, 714
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 138, 301
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 394, 726
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 3 cut(s) 337, 571, 627
SfcI CTRYAG 2 cut(s) 227, 752
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 41, 91, 477, 501
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 392, 724
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 2 cut(s) 127, 444
TaqI TCGA 1 cut(s) 214
TasI AATT 4 cut(s) 41, 91, 477, 501
TatI WGTACW 2 cut(s) 587, 629
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 425, 554, 605
Tru1I TTAA 3 cut(s) 438, 486, 504
Tru9I TTAA 3 cut(s) 438, 486, 504
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 290, 713
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 477
XceI RCATGY 1 cut(s) 579
XspI CTAG 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.