Rmu_sc0025217.1_g000001

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025217.1
OG0001723
Physical Location & Seq
Reverse (-)
154 .. 1139
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025217.1_g000001.1.cds

Sequence Viewer

Length: 573 bp
atgaaagagcttgaaattccttctggaattcagcctggagaaacagtaaagttgtcccgtatgggggttccaaacatgcgtaaaccttctgttagaggagatcatcactttgttgtgaatgtacttattccaaagagaatcagtggcgcagaacgcacacttgttgaagaactcgcttcacttaggacctctaaaaagggccactcaggtgcttcaaaaggcactgggacacaggatgcgcataaaagcagaaaccacgcaactagtacttcaaggcaggggaaaaaatgtgtttcgtccttgtggaactctataaaaggcgtattgggggggaggcagtcgcaggagagatttgcatcagttaccatggacagaccggcacttttgtggggttcaagcaagcctgattccttttatatggcatcaatttttggagttttagttgtaacttgtatttgtaccgcgataggaaagacccgaaacctcactttatcacaacacaaggatagttctcgtactcatagaacaaacaacaatgctgacggaaatactcgatctgacatagatgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

190

Amino Acids

20.69

Weight (kDa)

10.17

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 240
AccII CGCG 1 cut(s) 464
AciI CCGC 1 cut(s) 462
AcsI RAATTY 2 cut(s) 15, 27
AfaI GTAC 4 cut(s) 123, 268, 460, 517
AfiI CCNNNNNNNGG 2 cut(s) 63, 64
AgsI TTSAA 5 cut(s) 14, 167, 216, 273, 396
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 34
AleI CACNNNNGTG 2 cut(s) 207, 385
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 15, 27
AspLEI GCGC 2 cut(s) 149, 241
AspS9I GGNCC 2 cut(s) 186, 199
AvaII GGWCC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 36
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 1 cut(s) 264
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 186, 199
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 226, 365, 431
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 64
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 355
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 63, 64
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 40, 241
BslI CCNNNNNNNGG 2 cut(s) 63, 64
BsmFI GGGAC 2 cut(s) 40, 241
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 100, 554
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 100, 554
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 2 cut(s) 182, 205
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 2 cut(s) 149, 241
BstKTI GATC 2 cut(s) 103, 557
BstMBI GATC 2 cut(s) 100, 554
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 1 cut(s) 464
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 148, 222
Cac8I GCNNGC 1 cut(s) 401
CfoI GCGC 2 cut(s) 149, 241
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 186, 199
Csp6I GTAC 4 cut(s) 122, 267, 459, 516
CviAII CATG 2 cut(s) 76, 367
CviJI RGCY 4 cut(s) 10, 34, 201, 403
CviKI_1 RGCY 4 cut(s) 10, 34, 201, 403
CviQI GTAC 4 cut(s) 122, 267, 459, 516
DdeI CTNAG 2 cut(s) 182, 205
DpnI GATC 2 cut(s) 102, 556
DpnII GATC 2 cut(s) 100, 554
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 79, 370
FaiI YATR 9 cut(s) 62, 77, 243, 314, 368, 417, 419, 522, 563
FaqI GGGAC 2 cut(s) 40, 241
FatI CATG 2 cut(s) 75, 366
FokI GGATG 1 cut(s) 248
FspAI RTGCGCAY 1 cut(s) 240
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 2 cut(s) 148, 240
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 377
HhaI GCGC 2 cut(s) 149, 241
Hin1II CATG 2 cut(s) 79, 370
Hin6I GCGC 2 cut(s) 147, 239
HinP1I GCGC 2 cut(s) 147, 239
HinfI GANTC 2 cut(s) 138, 407
HpaII CCGG 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 30, 96
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 182, 205
Hsp92II CATG 2 cut(s) 79, 370
HspAI GCGC 2 cut(s) 147, 239
Kzo9I GATC 2 cut(s) 100, 554
LweI GCATC 3 cut(s) 226, 365, 431
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 361, 445
MalI GATC 2 cut(s) 102, 556
MboI GATC 2 cut(s) 100, 554
MboII GAAGA 1 cut(s) 179
MluCI AATT 3 cut(s) 15, 27, 426
MnlI CCTC 4 cut(s) 89, 199, 327, 494
MseI TTAA 1 cut(s) 571
MslI CAYNNNNRTG 2 cut(s) 207, 385
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 100, 554
NlaIII CATG 2 cut(s) 79, 370
NlaIV GGNNCC 1 cut(s) 69
NsbI TGCGCA 1 cut(s) 240
NspI RCATGY 1 cut(s) 79
OliI CACNNNNGTG 2 cut(s) 207, 385
PfeI GAWTC 2 cut(s) 138, 407
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 186, 199
PspPPI RGGWCCY 1 cut(s) 186
RsaI GTAC 4 cut(s) 123, 268, 460, 517
RsaNI GTAC 4 cut(s) 122, 267, 459, 516
RseI CAYNNNNRTG 2 cut(s) 207, 385
SaqAI TTAA 1 cut(s) 571
Sau3AI GATC 2 cut(s) 100, 554
Sau96I GGNCC 2 cut(s) 186, 199
ScaI AGTACT 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 36
SetI ASST 5 cut(s) 12, 88, 191, 211, 486
SfaNI GCATC 3 cut(s) 226, 365, 431
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 207, 385
SpeI ACTAGT 1 cut(s) 263
Sse9I AATT 3 cut(s) 15, 27, 426
SsiI CCGC 1 cut(s) 462
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 553
TasI AATT 3 cut(s) 15, 27, 426
TatI WGTACW 2 cut(s) 121, 266
TfiI GAWTC 2 cut(s) 138, 407
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 2 cut(s) 148, 229
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 2 cut(s) 148, 229
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 2 cut(s) 15, 27
XceI RCATGY 1 cut(s) 79
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.