FvH4_6g08920

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001723
Physical Location & Seq
Forward (+)
5290292 .. 5292740
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08920.t5

Sequence Viewer

Length: 810 bp
ATGGCCGTAATCCAAACTCATTTCACCTCCAAGCTCCCACAATTTCCCAAGTCCATTCTCAGCTCCGGCACTAACACCACATTGTTTACCGGAAAAAACCCAACTTTGAAACCCAAATTCGCTCATTTCATCCATACAAAACCTCCAAGTTTAGTCATCAGGGCCGCCGGAACTGATCACTATAAGACCCTCAACCTCAACAGAAATGCAACCTTGAAGGAGATAAAGACTTCTTACCGAAAGCTCGCTCCACAGTACCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAAAAGTTTAAAGAGGTTACTGCTGCATATGAGGTCCTGTCAGATGATGAGAAGAGATCTGCATATGATTGCTGCTCCGGTGATGCAGGCGTTCAGGGAGGAAATGGTTGTTCGACCATGGGTTCAACATGGAAGGTGAATGTTAAGTTCAATGGAATGGATGTGCACATTGACCACACTGGAAGCCAGACTTATGAAATTCGGTTTGAAGAACCCATTGTAATCAACTATTCATTTGTTGAGACATTTAAACCTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAAGGTTGATACTTGTGATGCTGGTGGTGGGAGTGCTGGAGCTCAATCTGATAACTACACCAAATCATGTACTGGTTCTGAAGGAACAGGAGGGCTCGGCACTATGATGGCAAGGGTCGTGAATGCTTTAATCATCATGTGTTTGGGACTGGCAGCCATTAGTCCAGGTTTTAGTCTTAACCTTTTGGTCTATTCACATTGGTACAATAACTGCAGGCAAAAGAAGTTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

270

Amino Acids

29.17

Weight (kDa)

8.8

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 59 - 120 5.8e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 116, 489
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 3 cut(s) 257, 646, 779
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 6 cut(s) 109, 217, 271, 417, 442, 500
AjnI CCWGG 1 cut(s) 739
AluBI AGCT 5 cut(s) 34, 63, 244, 287, 617
AluI AGCT 5 cut(s) 34, 63, 244, 287, 617
Alw21I GWGCWC 2 cut(s) 459, 619
Alw26I GTCTC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 455
AoxI GGCC 2 cut(s) 3, 162
ApaLI GTGCAC 1 cut(s) 455
ApeKI GCWGC 3 cut(s) 314, 363, 728
ApoI RAATTY 2 cut(s) 116, 489
AspS9I GGNCC 2 cut(s) 162, 325
AsuHPI GGTGA 3 cut(s) 16, 383, 439
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 459
BanII GRGCYC 2 cut(s) 619, 672
Bbv12I GWGCWC 2 cut(s) 459, 619
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 301, 350, 740
BccI CCATC 2 cut(s) 267, 676
BciT130I CCWGG 1 cut(s) 741
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 787
BglII AGATCT 1 cut(s) 347
BisI GCNGC 4 cut(s) 165, 315, 364, 729
BlsI GCNGC 4 cut(s) 166, 316, 365, 730
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 162, 325
BmrFI CCNGG 1 cut(s) 741
BmsI GCATC 2 cut(s) 364, 583
BpmI CTGGAG 2 cut(s) 303, 633
Bpu10I CCTNAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 2 cut(s) 89, 368
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 3 cut(s) 475, 652, 729
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 3 cut(s) 129, 259, 457
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 73, 279
BseNI ACTGG 3 cut(s) 475, 652, 729
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 3 cut(s) 301, 350, 740
BshFI GGCC 2 cut(s) 5, 164
BsiHKAI GWGCWC 2 cut(s) 459, 619
BsiSI CCGG 4 cut(s) 66, 90, 168, 369
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 5, 164
Bsp1286I GDGCHC 3 cut(s) 459, 619, 672
Bsp143I GATC 2 cut(s) 175, 347
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 5, 164
BspCNI CTCAG 2 cut(s) 72, 280
BspMAI CTGCAG 1 cut(s) 791
BsrI ACTGG 3 cut(s) 475, 652, 729
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 2 cut(s) 175, 347
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 246, 379, 791
BstDEI CTNAG 3 cut(s) 59, 288, 576
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 129, 259, 457
BstKTI GATC 2 cut(s) 178, 350
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 2 cut(s) 175, 347
BstNI CCWGG 1 cut(s) 741
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 787
BstSLI GKGCMC 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 301, 350, 740
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 2 cut(s) 5, 164
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 129, 259, 457
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 246, 379, 791
Cfr13I GGNCC 2 cut(s) 162, 325
Csp6I GTAC 3 cut(s) 256, 645, 778
CviAII CATG 4 cut(s) 409, 420, 642, 712
CviQI GTAC 3 cut(s) 256, 645, 778
DdeI CTNAG 3 cut(s) 59, 288, 576
DpnI GATC 2 cut(s) 177, 349
DpnII GATC 2 cut(s) 175, 347
DraI TTTAAA 2 cut(s) 301, 541
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 619, 672
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 619, 672
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 4 cut(s) 412, 423, 645, 715
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 1 cut(s) 735
FatI CATG 4 cut(s) 408, 419, 641, 711
FauNDI CATATG 2 cut(s) 319, 355
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 165, 315, 364, 729
FokI GGATG 3 cut(s) 116, 246, 464
FriOI GRGCYC 2 cut(s) 619, 672
Fsp4HI GCNGC 4 cut(s) 165, 315, 364, 729
GluI GCNGC 4 cut(s) 165, 315, 364, 729
GsuI CTGGAG 2 cut(s) 303, 633
HaeIII GGCC 2 cut(s) 5, 164
HapII CCGG 4 cut(s) 66, 90, 168, 369
Hin1II CATG 4 cut(s) 412, 423, 645, 715
HinfI GANTC 2 cut(s) 278, 566
HpaII CCGG 4 cut(s) 66, 90, 168, 369
HphI GGTGA 3 cut(s) 16, 383, 439
Hpy166II GTNNAC 2 cut(s) 87, 457
Hpy188I TCNGA 3 cut(s) 334, 625, 655
Hpy188III TCNNGA 3 cut(s) 263, 282, 694
Hpy8I GTNNAC 2 cut(s) 87, 457
HpyAV CCTTC 3 cut(s) 211, 418, 650
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 209, 317, 353, 377, 457, 789
HpyF3I CTNAG 3 cut(s) 59, 288, 576
Hsp92II CATG 4 cut(s) 412, 423, 645, 715
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 175, 347
LmnI GCTCC 7 cut(s) 39, 68, 253, 284, 371, 560, 614
Lsp1109I GCAGC 3 cut(s) 301, 350, 740
LweI GCATC 2 cut(s) 364, 583
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 177, 349
MboI GATC 2 cut(s) 175, 347
MboII GAAGA 2 cut(s) 355, 512
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 459, 619, 672
MluCI AATT 3 cut(s) 41, 116, 489
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 9 cut(s) 37, 153, 200, 206, 283, 298, 316, 383, 659
MseI TTAA 5 cut(s) 300, 435, 540, 704, 753
MslI CAYNNNNRTG 1 cut(s) 680
MspI CCGG 4 cut(s) 66, 90, 168, 369
MspR9I CCNGG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 1 cut(s) 741
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 2 cut(s) 319, 355
NdeII GATC 2 cut(s) 175, 347
NlaIII CATG 4 cut(s) 412, 423, 645, 715
NmeAIII GCCGAG 1 cut(s) 651
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 4 cut(s) 166, 316, 365, 730
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspPI GGNCC 2 cut(s) 162, 325
PspPPI RGGWCCY 1 cut(s) 325
PstI CTGCAG 1 cut(s) 791
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 3 cut(s) 257, 646, 779
RsaNI GTAC 3 cut(s) 256, 645, 778
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 619
SaqAI TTAA 5 cut(s) 300, 435, 540, 704, 753
SatI GCNGC 4 cut(s) 165, 315, 364, 729
Sau3AI GATC 2 cut(s) 175, 347
Sau96I GGNCC 2 cut(s) 162, 325
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 3 cut(s) 459, 619, 672
SfaNI GCATC 2 cut(s) 364, 583
SfcI CTRYAG 1 cut(s) 787
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 680
Sse9I AATT 3 cut(s) 41, 116, 489
SsiI CCGC 1 cut(s) 165
SstI GAGCTC 1 cut(s) 619
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 404
TasI AATT 3 cut(s) 41, 116, 489
TatI WGTACW 1 cut(s) 644
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 5 cut(s) 300, 435, 540, 704, 753
Tru9I TTAA 5 cut(s) 300, 435, 540, 704, 753
TscAI CASTG 1 cut(s) 475
TseI GCWGC 3 cut(s) 314, 363, 728
TspDTI ATGAA 3 cut(s) 118, 501, 513
TspRI CASTG 1 cut(s) 475
VneI GTGCAC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 116, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.