Rroxscaffold_6G00420410

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001723
Physical Location & Seq
Reverse (-)
41675049 .. 41687015
11967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420410.1

Sequence Viewer

Length: 786 bp
ATGGCCATAATCCAAACCCACTTCACCTCCAAGCTCCCCCAATTCCCCAACTCCATTCTCAGCTCCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCATTTCATCCGTACAAAACCTCCACGTTTGGTCATCAGGGCCGCCGGAACTGATTACTATAAGACCCTCAAGCTCGACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAGGGACTCTGGAGCTGAGGAAAAGTTCAAAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGAACTGCATATGATCGCTCTGGTGATGCAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCTATGGAACGGGTGAATCGGGAGGCATTAACGTTATTGTCAAGTCCACCGGAAGCCAGATATATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTCGTTTGCTAAGGCATTTGAAACTTGTGGTGGAAGTGGAGAAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTCTGGGGAGTGGAGCTGAATCGATAACGCATCAAATCATGTACGGTTACGGAGGAACAGGAGGGCTCGGCGCTGTGATAGTATCAATCATTCTGTTTTTGGTACTTGCAGCCATTATTCCAGGGAAAAGAAGTTGTGTTGTGAAGATGATTGCAAAGCAGGAGGTGGCATACAAGTCTGGTACATCTGCTAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

261

Amino Acids

28.24

Weight (kDa)

8.72

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 51 - 112 1.2e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 141
AclI AACGTT 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 477
AfaI GTAC 4 cut(s) 112, 629, 690, 769
AgsI TTSAA 6 cut(s) 85, 193, 247, 277, 390, 530
AjnI CCWGG 1 cut(s) 706
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 6 cut(s) 34, 63, 172, 220, 263, 602
AluI AGCT 6 cut(s) 34, 63, 172, 220, 263, 602
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 2 cut(s) 3, 138
ApeKI GCWGC 2 cut(s) 290, 695
ApoI RAATTY 1 cut(s) 477
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 138, 301
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 3 cut(s) 16, 356, 434
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 277, 707
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 708
BcnI CCSGG 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 660
BisI GCNGC 3 cut(s) 141, 291, 696
BlsI GCNGC 3 cut(s) 142, 292, 697
Bme1390I CCNGG 2 cut(s) 394, 708
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 138, 301
BmrFI CCNGG 2 cut(s) 394, 708
BmsI GCATC 3 cut(s) 337, 571, 625
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 2 cut(s) 264, 519
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 393, 707
BsaWI WCCGGW 2 cut(s) 65, 458
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 103, 133
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 393, 707
BseGI GGATG 2 cut(s) 105, 235
BseMII CTCAG 2 cut(s) 73, 255
BseXI GCAGC 2 cut(s) 277, 707
BshFI GGCC 2 cut(s) 5, 140
BshVI ATCGAT 1 cut(s) 608
BsiSI CCGG 4 cut(s) 66, 144, 393, 459
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 5, 140
Bsp1286I GDGCHC 1 cut(s) 654
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 5, 140
BspCNI CTCAG 2 cut(s) 72, 256
BspDI ATCGAT 1 cut(s) 608
BspEI TCCGGA 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 393, 707
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 2 cut(s) 231, 632
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 222, 352
BstDEI CTNAG 3 cut(s) 59, 264, 519
BstF5I GGATG 2 cut(s) 105, 235
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 708
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 392, 706
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 277, 707
Bsu15I ATCGAT 1 cut(s) 608
BsuRI GGCC 2 cut(s) 5, 140
BsuTUI ATCGAT 1 cut(s) 608
BtsCI GGATG 2 cut(s) 105, 235
Cac8I GCNNGC 2 cut(s) 222, 352
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 138, 301
ClaI ATCGAT 1 cut(s) 608
Csp6I GTAC 4 cut(s) 111, 628, 689, 768
CviAII CATG 2 cut(s) 576, 625
CviQI GTAC 4 cut(s) 111, 628, 689, 768
DdeI CTNAG 3 cut(s) 59, 264, 519
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 2 cut(s) 579, 628
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 575, 624
FauNDI CATATG 2 cut(s) 295, 331
Fnu4HI GCNGC 3 cut(s) 141, 291, 696
FokI GGATG 2 cut(s) 92, 222
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 3 cut(s) 141, 291, 696
GlaI GCGC 1 cut(s) 658
GluI GCNGC 3 cut(s) 141, 291, 696
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 2 cut(s) 5, 140
HapII CCGG 4 cut(s) 66, 144, 393, 459
HhaI GCGC 1 cut(s) 659
Hin1II CATG 2 cut(s) 579, 628
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HinfI GANTC 4 cut(s) 254, 425, 554, 605
HpaII CCGG 4 cut(s) 66, 144, 393, 459
HphI GGTGA 3 cut(s) 16, 356, 434
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 4 cut(s) 66, 239, 258, 429
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 231, 632
HpyCH4IV ACGT 2 cut(s) 124, 441
HpyCH4V TGCA 5 cut(s) 293, 329, 350, 695, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 3 cut(s) 59, 264, 519
HpySE526I ACGT 2 cut(s) 124, 441
Hsp92II CATG 2 cut(s) 579, 628
HspAI GCGC 1 cut(s) 657
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 4 cut(s) 39, 68, 260, 599
Lsp1109I GCAGC 2 cut(s) 277, 707
LweI GCATC 3 cut(s) 337, 571, 625
MaeII ACGT 2 cut(s) 124, 441
MaeIII GTNAC 2 cut(s) 397, 632
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 563, 742
MhlI GDGCHC 1 cut(s) 654
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 41, 91, 477, 501
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 438, 486, 504
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 66, 144, 393, 459
MspR9I CCNGG 2 cut(s) 394, 708
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 394
NdeI CATATG 2 cut(s) 295, 331
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 579, 628
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 579
PfeI GAWTC 3 cut(s) 425, 554, 605
PkrI GCNGC 3 cut(s) 142, 292, 697
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspPI GGNCC 2 cut(s) 138, 301
PspPPI RGGWCCY 1 cut(s) 301
RsaI GTAC 4 cut(s) 112, 629, 690, 769
RsaNI GTAC 4 cut(s) 111, 628, 689, 768
SaqAI TTAA 3 cut(s) 438, 486, 504
SatI GCNGC 3 cut(s) 141, 291, 696
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 138, 301
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 394, 708
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 3 cut(s) 337, 571, 625
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 4 cut(s) 41, 91, 477, 501
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 392, 706
TaaI ACNGT 2 cut(s) 231, 632
TaiI ACGT 2 cut(s) 127, 444
TaqI TCGA 3 cut(s) 174, 214, 608
TasI AATT 4 cut(s) 41, 91, 477, 501
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 425, 554, 605
Tru1I TTAA 3 cut(s) 438, 486, 504
Tru9I TTAA 3 cut(s) 438, 486, 504
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 290, 695
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 94, 489
TspGWI ACGGA 2 cut(s) 98, 651
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 477
XceI RCATGY 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.