Rroxscaffold_3G00275210

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
66710515 .. 66715937
5423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275210.1

Sequence Viewer

Length: 1641 bp
ATGCCCATAATTCAAACCCACTCACCTTACTCTTTCAGCTCCTCCACTCTCAGACCCTCTTCCACATTCTTCACCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCCTTTCATCCGTACAAAACCTCCACGTTTGGTCCTCAGGGCCGCCGGAACCGATTACTATAAGACCCTCAACCTCGACAGAAATGCAACCCTGAAGGAGATAAAGACATCTTATCGAAAAAGCTCGCTCGACGGGTTAGCTTTTCTCAGTTGGTACCATCCTGATTTGAACAAGGGCTCTGGAGCTGAAGACAAGTTCAAAGAGATTAGTGCTGCATATGAGGTCCTATCAGATGAGGAGAAAAGAGCTTCGTATGACCGCTTTGGCGAGGCAGGCTTACAGGGAGAATATGGTTCTTCAAACATGGGTTCAGCCGGGGTGGATCCTTTTGACGTTTTTGATGCGTACTTTGGGGGAAGGGGTGAATCAGGAGGCATGAACTTCAATTTTAACTTCAATACGCCAAACTCAGGAAATCAGGGCCTTGACATTCGGTATGAACTGCAACTGAGCTTTGAAGAATCCATTTTCGGAGGACAGAAGGAATTTGAAGTTTCTTGTGTTGAGACTTGTGATACGTGTGGTGGAAGTGGTGCTAAATCTGATAACTGCATCAAATCCTGTACTGGTTGTGGAGGAAAGAGGAGGGGTGACAAAAACTCAGAGAACACCATTTGGCATGATATCCATGTTGGTGATGTCTACATAATGCTTCGTATAAATGAAAAGGCTGGAATTCGGAGGGAGGGTCTCAATCTATATTCAACTATAAATATTGATTATACTGAGGCTATTTTAGGAACTGTGATAAAGGTAGAAACTGTTGAAGGCATGAAAGAGCTTGAAATTCCTTCTGGAATTCAGCCTGGAGAAACAGTAAAGTTGTCCCGTATGGGGGTTCCAAACATGCGTAAACCTTCTGTCAGAGGAGATCATCACTTTGTTGTGAATGTACTTATTCCAAAGAGAATCAGTGGCGCAGAACGCACACTTGTTGAAGAACTCGCTTCACTTAGGACCTGTAAAAGGGCCACTCAGGTGCTTCAAAAGGCACTGGGACACAAGATGGGAATTCTGACGCGCATAAAAAGCAGAAACCACGCAACTAGTACTTCAAGGCAGGGGAAAAAATGTGTTTCGTCCTTGTGGAACTCTATAAAAGGCGTATTGGGGGGGAGGCAGTCGCAGGACAGATTTGCATCAGTTACCATGGACAGACCGGCACTTTTGTGGGGTTCAAGCAAGCCTGATTCCTTTTATATGGCATCAATTTTTGGAGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAAAAGCACACCTTGCACAAAGTCACACAATACAAGAAAGGAAAGGACAGCCTTGCTGCTCAGGGGAAGCGTCGTTATGATCGTAAGCAATCGGGTTATGGAGGTCAGACCAAGCCGGTGTTTCACAAGAAGGCCAAAACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCGCAGCACCCAATCAAGAGGTGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGCAAGGGAACCTCTCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

60.61

Weight (kDa)

9.64

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 54 - 122 1.1e-19 DnaJ domain
DnaJ_C PF01556 180 - 337 4.2e-24 DnaJ C terminal domain
Ribosomal_L44 PF00935 460 - 535 4.6e-32 Ribosomal protein L44
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 750
AccII CGCG 1 cut(s) 1129
AciI CCGC 2 cut(s) 150, 367
AclI AACGTT 1 cut(s) 1332
AclWI GGATC 2 cut(s) 425, 438
AcsI RAATTY 5 cut(s) 593, 783, 894, 906, 1119
AcuI CTGAAG 2 cut(s) 221, 315
AfaI GTAC 6 cut(s) 121, 263, 455, 673, 1002, 1159
AfiI CCNNNNNNNGG 5 cut(s) 518, 942, 943, 1074, 1546
AflIII ACRYGT 1 cut(s) 626
AhlI ACTAGT 1 cut(s) 1154
AjnI CCWGG 2 cut(s) 913, 1545
AleI CACNNNNGTG 2 cut(s) 1085, 1276
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
AluBI AGCT 7 cut(s) 39, 231, 248, 293, 356, 561, 889
AluI AGCT 7 cut(s) 39, 231, 248, 293, 356, 561, 889
Alw26I GTCTC 3 cut(s) 608, 803, 1602
AlwI GGATC 2 cut(s) 425, 438
AoxI GGCC 4 cut(s) 147, 529, 1077, 1506
ApeKI GCWGC 3 cut(s) 320, 1430, 1567
ApoI RAATTY 5 cut(s) 593, 783, 894, 906, 1119
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 1028, 1131
AspS9I GGNCC 6 cut(s) 139, 147, 331, 529, 1065, 1077
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 5 cut(s) 15, 64, 482, 710, 755
AvaII GGWCC 3 cut(s) 139, 331, 1065
AxyI CCTNAGG 1 cut(s) 143
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 3 cut(s) 303, 1346, 1355
BbvCI CCTCAGC 1 cut(s) 1532
BbvI GCAGC 3 cut(s) 307, 1417, 1579
BccI CCATC 2 cut(s) 273, 1108
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 2 cut(s) 915, 1547
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 3 cut(s) 608, 803, 1602
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 2 cut(s) 1155, 1639
BisI GCNGC 4 cut(s) 150, 321, 1431, 1568
BlsI GCNGC 4 cut(s) 151, 322, 1432, 1569
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 3 cut(s) 424, 915, 1547
Bme18I GGWCC 3 cut(s) 139, 331, 1065
BmgT120I GGNCC 6 cut(s) 139, 147, 331, 529, 1065, 1077
BmiI GGNNCC 6 cut(s) 157, 263, 432, 948, 1538, 1627
BmrFI CCNGG 3 cut(s) 424, 915, 1547
BmrI ACTGGG 1 cut(s) 1112
BmsI GCATC 4 cut(s) 439, 669, 1256, 1322
BmuI ACTGGG 1 cut(s) 1112
BpiI GAAGAC 3 cut(s) 303, 1346, 1355
BpmI CTGGAG 2 cut(s) 309, 936
Bpu10I CCTNAGC 2 cut(s) 1434, 1532
BpuMI CCSGG 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 627
BsaBI GATNNNNATC 1 cut(s) 1246
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 3 cut(s) 423, 1257, 1546
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 8 cut(s) 112, 142, 781, 811, 909, 939, 1317, 1347
Bsc4I CCNNNNNNNGG 5 cut(s) 518, 942, 943, 1074, 1546
Bse118I RCCGGY 2 cut(s) 1267, 1489
Bse1I ACTGG 2 cut(s) 679, 1107
Bse21I CCTNAGG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 1246
BseBI CCWGG 2 cut(s) 915, 1547
BseDI CCNNGG 3 cut(s) 423, 1257, 1546
BseGI GGATG 2 cut(s) 114, 265
BseJI GATNNNNATC 1 cut(s) 1246
BseLI CCNNNNNNNGG 5 cut(s) 518, 942, 943, 1074, 1546
BseNI ACTGG 2 cut(s) 679, 1107
BseRI GAGGAG 5 cut(s) 31, 359, 706, 990, 1620
BseXI GCAGC 3 cut(s) 307, 1417, 1579
Bsh1236I CGCG 1 cut(s) 1129
BshFI GGCC 4 cut(s) 149, 531, 1079, 1508
BshNI GGYRCC 1 cut(s) 261
BsiSI CCGG 5 cut(s) 75, 153, 423, 1268, 1490
BslFI GGGAC 2 cut(s) 919, 1119
BslI CCNNNNNNNGG 5 cut(s) 518, 942, 943, 1074, 1546
BsmAI GTCTC 3 cut(s) 608, 803, 1602
BsmFI GGGAC 2 cut(s) 919, 1119
BsnI GGCC 4 cut(s) 149, 531, 1079, 1508
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 430, 979, 1453
Bsp19I CCATGG 1 cut(s) 1257
BspACI CCGC 2 cut(s) 150, 367
BspANI GGCC 4 cut(s) 149, 531, 1079, 1508
BspFNI CGCG 1 cut(s) 1129
BspLI GGNNCC 6 cut(s) 157, 263, 432, 948, 1538, 1627
BspPI GGATC 2 cut(s) 425, 438
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 803
BsrFI RCCGGY 2 cut(s) 1267, 1489
BsrI ACTGG 2 cut(s) 679, 1107
BssAI RCCGGY 2 cut(s) 1267, 1489
BssECI CCNNGG 3 cut(s) 423, 1257, 1546
BssMI GATC 3 cut(s) 430, 979, 1453
BssT1I CCWWGG 1 cut(s) 1257
Bst2UI CCWGG 2 cut(s) 915, 1547
Bst4CI ACNGT 3 cut(s) 853, 871, 925
Bst6I CTCTTC 1 cut(s) 64
BstAPI GCANNNNNTGC 2 cut(s) 1371, 1387
BstBAI YACGTR 1 cut(s) 627
BstC8I GCNNGC 5 cut(s) 233, 382, 1292, 1556, 1589
BstDSI CCRYGG 1 cut(s) 1257
BstENI CCTNNNNNAGG 1 cut(s) 1072
BstF5I GGATG 2 cut(s) 114, 265
BstFNI CGCG 1 cut(s) 1129
BstHHI GCGC 2 cut(s) 1028, 1131
BstKTI GATC 3 cut(s) 433, 982, 1456
BstMAI GTCTC 3 cut(s) 608, 803, 1602
BstMBI GATC 3 cut(s) 430, 979, 1453
BstMWI GCNNNNNNNGC 7 cut(s) 381, 1032, 1137, 1371, 1387, 1551, 1564
BstNI CCWGG 2 cut(s) 915, 1547
BstNSI RCATGY 2 cut(s) 958, 1562
BstSCI CCNGG 3 cut(s) 422, 913, 1545
BstUI CGCG 1 cut(s) 1129
BstV1I GCAGC 3 cut(s) 307, 1417, 1579
BstV2I GAAGAC 3 cut(s) 303, 1346, 1355
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 4 cut(s) 149, 531, 1079, 1508
BtgI CCRYGG 1 cut(s) 1257
BtsCI GGATG 2 cut(s) 114, 265
BtsIMutI CAGTG 2 cut(s) 1027, 1100
Cac8I GCNNGC 5 cut(s) 233, 382, 1292, 1556, 1589
CfoI GCGC 2 cut(s) 1028, 1131
Cfr10I RCCGGY 2 cut(s) 1267, 1489
Cfr13I GGNCC 6 cut(s) 139, 147, 331, 529, 1065, 1077
CseI GACGC 2 cut(s) 1135, 1433
Csp6I GTAC 6 cut(s) 120, 262, 454, 672, 1001, 1158
CviAII CATG 8 cut(s) 412, 484, 728, 737, 880, 955, 1258, 1559
CviQI GTAC 6 cut(s) 120, 262, 454, 672, 1001, 1158
DpnI GATC 3 cut(s) 432, 981, 1455
DpnII GATC 3 cut(s) 430, 979, 1453
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 1257
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 803
Eco32I GATATC 1 cut(s) 733
Eco47I GGWCC 3 cut(s) 139, 331, 1065
Eco57I CTGAAG 2 cut(s) 221, 315
Eco81I CCTNAGG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 1072
EcoO109I RGGNCCY 3 cut(s) 331, 529, 1065
EcoRI GAATTC 3 cut(s) 783, 906, 1119
EcoRII CCWGG 2 cut(s) 913, 1545
EcoRV GATATC 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 1257
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 1257
FaeI CATG 8 cut(s) 415, 487, 731, 740, 883, 958, 1261, 1562
FalI AAGNNNNNCTT 2 cut(s) 1370, 1402
FaqI GGGAC 2 cut(s) 919, 1119
FatI CATG 8 cut(s) 411, 483, 727, 736, 879, 954, 1257, 1558
FauNDI CATATG 1 cut(s) 325
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 150, 321, 1431, 1568
FokI GGATG 2 cut(s) 101, 252
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 4 cut(s) 150, 321, 1431, 1568
FspBI CTAG 2 cut(s) 1155, 1639
GlaI GCGC 2 cut(s) 1027, 1130
GluI GCNGC 4 cut(s) 150, 321, 1431, 1568
GsuI CTGGAG 2 cut(s) 309, 936
HaeIII GGCC 4 cut(s) 149, 531, 1079, 1508
HapII CCGG 5 cut(s) 75, 153, 423, 1268, 1490
HgaI GACGC 2 cut(s) 1135, 1433
HhaI GCGC 2 cut(s) 1028, 1131
Hin1II CATG 8 cut(s) 415, 487, 731, 740, 883, 958, 1261, 1562
Hin6I GCGC 2 cut(s) 1026, 1129
HinP1I GCGC 2 cut(s) 1026, 1129
HinfI GANTC 4 cut(s) 473, 569, 1017, 1298
HpaII CCGG 5 cut(s) 75, 153, 423, 1268, 1490
HphI GGTGA 5 cut(s) 15, 64, 482, 710, 755
Hpy166II GTNNAC 3 cut(s) 751, 962, 1330
Hpy188III TCNNGA 6 cut(s) 269, 288, 477, 519, 903, 1579
Hpy8I GTNNAC 3 cut(s) 751, 962, 1330
Hpy99I CGWCG 2 cut(s) 242, 1449
HpyAV CCTTC 8 cut(s) 196, 459, 583, 869, 909, 975, 1498, 1609
HpyCH4III ACNGT 3 cut(s) 853, 871, 925
HpyCH4IV ACGT 4 cut(s) 133, 441, 626, 1332
HpyF10VI GCNNNNNNNGC 7 cut(s) 381, 1032, 1137, 1371, 1387, 1551, 1564
HpySE526I ACGT 4 cut(s) 133, 441, 626, 1332
Hsp92II CATG 8 cut(s) 415, 487, 731, 740, 883, 958, 1261, 1562
HspAI GCGC 2 cut(s) 1026, 1129
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 430, 979, 1453
LmnI GCTCC 4 cut(s) 44, 112, 290, 1542
Lsp1109I GCAGC 3 cut(s) 307, 1417, 1579
LweI GCATC 4 cut(s) 439, 669, 1256, 1322
MaeI CTAG 2 cut(s) 1155, 1639
MaeII ACGT 4 cut(s) 133, 441, 626, 1332
MaeIII GTNAC 3 cut(s) 698, 1252, 1396
MalI GATC 3 cut(s) 432, 981, 1455
MboI GATC 3 cut(s) 430, 979, 1453
MboII GAAGA 9 cut(s) 51, 61, 308, 396, 578, 1058, 1351, 1360, 1534
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 9 cut(s) 9, 100, 493, 593, 783, 894, 906, 1119, 1317
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 3 cut(s) 741, 1085, 1276
MspI CCGG 5 cut(s) 75, 153, 423, 1268, 1490
MspR9I CCNGG 3 cut(s) 424, 915, 1547
MvaI CCWGG 2 cut(s) 915, 1547
MvnI CGCG 1 cut(s) 1129
MwoI GCNNNNNNNGC 7 cut(s) 381, 1032, 1137, 1371, 1387, 1551, 1564
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 1 cut(s) 1257
NdeI CATATG 1 cut(s) 325
NdeII GATC 3 cut(s) 430, 979, 1453
NlaIII CATG 8 cut(s) 415, 487, 731, 740, 883, 958, 1261, 1562
NlaIV GGNNCC 6 cut(s) 157, 263, 432, 948, 1538, 1627
NmuCI GTSAC 2 cut(s) 698, 1396
NspI RCATGY 2 cut(s) 958, 1562
OliI CACNNNNGTG 2 cut(s) 1085, 1276
PcsI WCGNNNNNNNCGW 1 cut(s) 1453
PfeI GAWTC 4 cut(s) 473, 569, 1017, 1298
PkrI GCNGC 4 cut(s) 151, 322, 1432, 1569
Ppu21I YACGTR 1 cut(s) 627
PpuMI RGGWCCY 2 cut(s) 331, 1065
Psp1406I AACGTT 1 cut(s) 1332
Psp5II RGGWCCY 2 cut(s) 331, 1065
Psp6I CCWGG 2 cut(s) 913, 1545
PspGI CCWGG 2 cut(s) 913, 1545
PspN4I GGNNCC 6 cut(s) 157, 263, 432, 948, 1538, 1627
PspPI GGNCC 6 cut(s) 139, 147, 331, 529, 1065, 1077
PspPPI RGGWCCY 2 cut(s) 331, 1065
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 6 cut(s) 121, 263, 455, 673, 1002, 1159
RsaNI GTAC 6 cut(s) 120, 262, 454, 672, 1001, 1158
RseI CAYNNNNRTG 3 cut(s) 741, 1085, 1276
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 4 cut(s) 150, 321, 1431, 1568
Sau3AI GATC 3 cut(s) 430, 979, 1453
Sau96I GGNCC 6 cut(s) 139, 147, 331, 529, 1065, 1077
ScaI AGTACT 1 cut(s) 1159
ScrFI CCNGG 3 cut(s) 424, 915, 1547
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 4 cut(s) 439, 669, 1256, 1322
SinI GGWCC 3 cut(s) 139, 331, 1065
SmiMI CAYNNNNRTG 3 cut(s) 741, 1085, 1276
SpeI ACTAGT 1 cut(s) 1154
Sse9I AATT 9 cut(s) 9, 100, 493, 593, 783, 894, 906, 1119, 1317
SsiI CCGC 2 cut(s) 150, 367
SspI AATATT 1 cut(s) 823
SspMI CTAG 2 cut(s) 1155, 1639
StyD4I CCNGG 3 cut(s) 422, 913, 1545
StyI CCWWGG 1 cut(s) 1257
TaaI ACNGT 3 cut(s) 853, 871, 925
TaiI ACGT 4 cut(s) 136, 444, 629, 1335
TaqI TCGA 3 cut(s) 183, 223, 237
TasI AATT 9 cut(s) 9, 100, 493, 593, 783, 894, 906, 1119, 1317
TatI WGTACW 3 cut(s) 671, 1000, 1157
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 4 cut(s) 473, 569, 1017, 1298
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 1027, 1107
TseFI GTSAC 2 cut(s) 698, 1396
TseI GCWGC 3 cut(s) 320, 1430, 1567
Tsp45I GTSAC 2 cut(s) 698, 1396
TspDTI ATGAA 5 cut(s) 103, 500, 561, 786, 896
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 1027, 1107
VpaK11BI GGWCC 3 cut(s) 139, 331, 1065
XagI CCTNNNNNAGG 1 cut(s) 1072
XapI RAATTY 5 cut(s) 593, 783, 894, 906, 1119
XceI RCATGY 2 cut(s) 958, 1562
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 2 cut(s) 1155, 1639
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.