Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001723

Physical Location & Seq

Genomic Coordinates Forward (+)

957564 .. 961692

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGCCCATAATTCAAACCCACTCACCTCACTCTTTCAGCTCCTCCACTCTCAGACCCTCTTCCACATTCTTCACCGGAAAAGACCCAACTTTGAAACCCAATTTCGTTCCTTTCATCCGTACAAAACCTCCACGTTTGGTCCTCAGGGCCGCCGGAACCGATTACTATAAGACCCTCAACCTCGACAGAAATGCAACCCTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCGACAGTACCATCCTGATTTGAACAAGGGCTCTGGAGCTGAAGACAAGTTCAAAGAGATTAGTGCTGCATATGAGGTCCTATCAGATGAGGAGAAAAGAGCTTCGTATGACCGCTTTGGCGTGGCAGGCTTACAGGGAGAATATGGTTCTTCAAACATGGGTTCAGCCGGGGTGGATCCTTTTGACGTTTTTGATGCGTACTTTGGGGGAAGGGGTGAATCAGGAGGCATGAACTTCAATTTTAACTTCAATACGCCAAACTCAGGAAATCAGGGCCTTGACATTCGCTATGAACTGCAACTGAGCTTTGAAGAATCCATTTTCGGAGGACAGAAGGAATTTGAAGTTTCTTGTGTTGAGACTTGTGATACGTGTGGTGGAAGTGGTGCTAAATCTGATAACTGCATCAAATCATGTACTGGTTGTGGAGGAAGAGGAGGGGTGACAAAAACTCAGAGAACACCATTTGGCATGATATCCATGGTATCTACCTGCTCAAAGTGTGACGGTCAAGGTACAATAATAACTGATCCCTGCAAAAAATGCAATGGCAAGGGACAAGTGCAGTCAAAAAGAGCAATGGTTGTAACCATTCCAGCTGGTGTTAGTGATGGAGACACAATGAAAGTTCAAGGGGAGGGGAATATTGATAAGAGAAGGGGTGTAGTTGGTGATGTCTACATAACGCTTCGTATAAATGAAAAGGCTGGAATTCGGAGGGAGGGTGTCAATCTATATTCAACTATAAATATTGATTATACTGAGGCTATTTTAGGAACTGTGATAAAGGTAGAAACTGTTGAAGGCATGAAAGAGCTTGAAATTCCTTCTGGAATTCAGCCTGGAGAAACAGTAAAGTTGTCCCGTATGGGGGTTCCAAACATGCGTAAACCTTCTGTTAGAGGAGATCATCACTTTGTTGTGAATGTACTTATTCCAAAGAGAATCAGTGGCGCAGAACGCACACTTGTTGAAGAACTCGCTTCACTTAGGACCTCTAAAAAGGGCCACTCAGGTGCTTCAAAAGGCACTGGGACACAAGATGCGCATAAAAGCAGAAACCACGCGACTAGTACTTCAAGGCAGGGGAAAAAATGTGTTTCGTCCTTGTGGAACTCTATAAAAGGCGTATTGGGGTATGCCTTTGTGTCTCATTTCCATAAGTTCTGGTTTTCGGTCTATCTTCATGTTAAAAGAAGAAAATTTCTGCATTCTATTATTCTGGTTCTGTCATTTCTTGCCTCTCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

495

Amino Acids

54.13

Weight (kDa)

9.38

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	54 - 115	4.3e-25	DnaJ domain
DnaJ_C	PF01556	173 - 391	1.1e-37	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	200 - 264	1.3e-14	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17830
fragaria_vesca	FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_5g17580 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920 FvH4_6g08920
malus_domestica	MD14G1238500.v1.1
prunus_persica	Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1 Prupe.5G235700_v2.0.a1
pyrus_communis	pycom06g20580 pycom14g19960
rosa_chinensis	RchiOBHm_Chr3g0459211 RchiOBHm_Chr7g0178061
rosa_laevigata	RLG00000005475 RLG00000025103
rosa_multiflora	Rmu_co8457643.1_g000001 Rmu_sc0002435.1_g000013 Rmu_sc0014208.1_g000009 Rmu_sc0025216.1_g000001 Rmu_sc0025217.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275210 Rroxscaffold_6G00420410
rosa_rugosa	Rorug03G0034200 Rorug06G0413200
rosa_samantha	Rh3AG092300 Rh3BG095100 Rh3CG096200 Rh3DG096000 Rh7AG012400 Rh7BG012300 Rh7CG012300 Rh7DG012600
rosa_wichuraiana	Rw3G007920 Rw7G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1281
Acc36I	ACCTGC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	1 cut(s)	1301
AciI	CCGC	2 cut(s)	150, 346
AclWI	GGATC	3 cut(s)	404, 417, 758
AcsI	RAATTY	5 cut(s)	572, 945, 1056, 1068, 1436
AcuI	CTGAAG	2 cut(s)	221, 294
AfaI	GTAC	7 cut(s)	121, 242, 434, 652, 751, 1164, 1309
AfiI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
AflIII	ACRYGT	1 cut(s)	605
AhlI	ACTAGT	1 cut(s)	1304
AjnI	CCWGG	1 cut(s)	1075
AleI	CACNNNNGTG	1 cut(s)	1248
AluBI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
AluI	AGCT	7 cut(s)	39, 229, 272, 335, 540, 833, 1051
Alw26I	GTCTC	3 cut(s)	587, 843, 1389
AlwI	GGATC	3 cut(s)	404, 417, 758
AoxI	GGCC	3 cut(s)	147, 508, 1240
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	5 cut(s)	572, 945, 1056, 1068, 1436
AspLEI	GCGC	2 cut(s)	1190, 1282
AspS9I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	5 cut(s)	15, 64, 461, 688, 917
AvaII	GGWCC	3 cut(s)	139, 310, 1227
AxyI	CCTNAGG	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	252, 839
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	1077
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	587, 843, 1389
BcuI	ACTAGT	1 cut(s)	1304
BfaI	CTAG	1 cut(s)	1305
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	2 cut(s)	150, 300
BlsI	GCNGC	2 cut(s)	151, 301
BmcAI	AGTACT	1 cut(s)	1309
Bme1390I	CCNGG	2 cut(s)	403, 1077
Bme18I	GGWCC	3 cut(s)	139, 310, 1227
BmgT120I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
BmiI	GGNNCC	3 cut(s)	157, 411, 1110
BmrFI	CCNGG	2 cut(s)	403, 1077
BmrI	ACTGGG	1 cut(s)	1275
BmsI	GCATC	3 cut(s)	418, 648, 1267
BmuI	ACTGGG	1 cut(s)	1275
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	2 cut(s)	288, 1098
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	402, 714
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 142, 943, 973, 1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
Bse1I	ACTGG	2 cut(s)	658, 1270
Bse21I	CCTNAGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	787, 819
BseBI	CCWGG	1 cut(s)	1077
BseDI	CCNNGG	2 cut(s)	402, 714
BseGI	GGATG	2 cut(s)	114, 244
BseLI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BseMI	GCAATG	2 cut(s)	787, 819
BseMII	CTCAG	7 cut(s)	64, 157, 510, 527, 701, 987, 1260
BseNI	ACTGG	2 cut(s)	658, 1270
BseRI	GAGGAG	4 cut(s)	31, 338, 684, 1152
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	1 cut(s)	1301
BshFI	GGCC	3 cut(s)	149, 510, 1242
BsiSI	CCGG	3 cut(s)	75, 153, 402
BslFI	GGGAC	3 cut(s)	804, 1081, 1282
BslI	CCNNNNNNNGG	3 cut(s)	497, 1104, 1105
BsmAI	GTCTC	3 cut(s)	587, 843, 1389
BsmFI	GGGAC	3 cut(s)	804, 1081, 1282
BsmI	GAATGC	1 cut(s)	1444
BsnI	GGCC	3 cut(s)	149, 510, 1242
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	409, 763, 1141
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	2 cut(s)	150, 346
BspANI	GGCC	3 cut(s)	149, 510, 1242
BspCNI	CTCAG	7 cut(s)	63, 156, 509, 528, 700, 988, 1259
BspFNI	CGCG	1 cut(s)	1301
BspLI	GGNNCC	3 cut(s)	157, 411, 1110
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	3 cut(s)	404, 417, 758
BsrDI	GCAATG	2 cut(s)	787, 819
BsrI	ACTGG	2 cut(s)	658, 1270
BssECI	CCNNGG	2 cut(s)	402, 714
BssMI	GATC	3 cut(s)	409, 763, 1141
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
Bst6I	CTCTTC	2 cut(s)	64, 661
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	231, 361
BstDEI	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	114, 244
BstFNI	CGCG	1 cut(s)	1301
BstHHI	GCGC	2 cut(s)	1190, 1282
BstKTI	GATC	3 cut(s)	412, 766, 1144
BstMAI	GTCTC	3 cut(s)	587, 843, 1389
BstMBI	GATC	3 cut(s)	409, 763, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	2 cut(s)	401, 1075
BstUI	CGCG	1 cut(s)	1301
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	149, 510, 1242
BtgI	CCRYGG	1 cut(s)	714
BtsCI	GGATG	2 cut(s)	114, 244
BtsIMutI	CAGTG	2 cut(s)	1189, 1263
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	231, 361
CfoI	GCGC	2 cut(s)	1190, 1282
Cfr13I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
Csp6I	GTAC	7 cut(s)	120, 241, 433, 651, 750, 1163, 1308
CviAII	CATG	8 cut(s)	391, 463, 648, 706, 715, 1042, 1117, 1421
CviQI	GTAC	7 cut(s)	120, 241, 433, 651, 750, 1163, 1308
DdeI	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
DpnI	GATC	3 cut(s)	411, 765, 1143
DpnII	GATC	3 cut(s)	409, 763, 1141
Eam1104I	CTCTTC	2 cut(s)	64, 661
EarI	CTCTTC	2 cut(s)	64, 661
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	139, 310, 1227
Eco57I	CTGAAG	2 cut(s)	221, 294
Eco81I	CCTNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	3 cut(s)	310, 508, 1227
EcoRI	GAATTC	2 cut(s)	945, 1068
EcoRII	CCWGG	1 cut(s)	1075
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1424
FaqI	GGGAC	3 cut(s)	804, 1081, 1282
FatI	CATG	8 cut(s)	390, 462, 647, 705, 714, 1041, 1116, 1420
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	150, 300
FokI	GGATG	2 cut(s)	101, 231
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	150, 300
FspAI	RTGCGCAY	1 cut(s)	1281
FspBI	CTAG	1 cut(s)	1305
FspI	TGCGCA	1 cut(s)	1281
GlaI	GCGC	2 cut(s)	1189, 1281
GluI	GCNGC	2 cut(s)	150, 300
GsuI	CTGGAG	2 cut(s)	288, 1098
HaeIII	GGCC	3 cut(s)	149, 510, 1242
HapII	CCGG	3 cut(s)	75, 153, 402
HhaI	GCGC	2 cut(s)	1190, 1282
Hin1II	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1424
Hin6I	GCGC	2 cut(s)	1188, 1280
HinP1I	GCGC	2 cut(s)	1188, 1280
HinfI	GANTC	3 cut(s)	452, 548, 1179
HpaII	CCGG	3 cut(s)	75, 153, 402
HphI	GGTGA	5 cut(s)	15, 64, 461, 688, 917
Hpy166II	GTNNAC	2 cut(s)	913, 1124
Hpy188I	TCNGA	7 cut(s)	53, 319, 560, 631, 690, 951, 1487
Hpy188III	TCNNGA	5 cut(s)	248, 267, 456, 498, 1065
Hpy8I	GTNNAC	2 cut(s)	913, 1124
HpyAV	CCTTC	7 cut(s)	196, 438, 562, 885, 1031, 1071, 1137
HpyCH4III	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
HpyCH4IV	ACGT	3 cut(s)	133, 420, 605
HpyCH4V	TGCA	8 cut(s)	194, 302, 532, 639, 771, 780, 799, 1444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
HpyF3I	CTNAG	8 cut(s)	50, 143, 496, 536, 687, 996, 1223, 1246
HpySE526I	ACGT	3 cut(s)	133, 420, 605
Hsp92II	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1424
HspAI	GCGC	2 cut(s)	1188, 1280
Kzo9I	GATC	3 cut(s)	409, 763, 1141
LmnI	GCTCC	2 cut(s)	44, 269
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	3 cut(s)	418, 648, 1267
MaeI	CTAG	1 cut(s)	1305
MaeII	ACGT	3 cut(s)	133, 420, 605
MaeIII	GTNAC	3 cut(s)	676, 737, 820
MalI	GATC	3 cut(s)	411, 765, 1143
MboI	GATC	3 cut(s)	409, 763, 1141
MboII	GAAGA	9 cut(s)	51, 61, 287, 375, 557, 678, 1220, 1409, 1443
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	8 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1436
MseI	TTAA	2 cut(s)	477, 1425
MslI	CAYNNNNRTG	1 cut(s)	1248
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	3 cut(s)	75, 153, 402
MspR9I	CCNGG	2 cut(s)	403, 1077
Mva1269I	GAATGC	1 cut(s)	1444
MvaI	CCWGG	1 cut(s)	1077
MvnI	CGCG	1 cut(s)	1301
MwoI	GCNNNNNNNGC	3 cut(s)	360, 777, 1194
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	409, 763, 1141
NlaIII	CATG	8 cut(s)	394, 466, 651, 709, 718, 1045, 1120, 1424
NlaIV	GGNNCC	3 cut(s)	157, 411, 1110
NmuCI	GTSAC	2 cut(s)	676, 737
NsbI	TGCGCA	1 cut(s)	1281
NspI	RCATGY	1 cut(s)	1120
OliI	CACNNNNGTG	1 cut(s)	1248
PctI	GAATGC	1 cut(s)	1444
PfeI	GAWTC	3 cut(s)	452, 548, 1179
PkrI	GCNGC	2 cut(s)	151, 301
Ppu21I	YACGTR	1 cut(s)	606
PpuMI	RGGWCCY	2 cut(s)	310, 1227
Psp5II	RGGWCCY	2 cut(s)	310, 1227
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	3 cut(s)	157, 411, 1110
PspPI	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
PspPPI	RGGWCCY	2 cut(s)	310, 1227
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	7 cut(s)	121, 242, 434, 652, 751, 1164, 1309
RsaNI	GTAC	7 cut(s)	120, 241, 433, 651, 750, 1163, 1308
RseI	CAYNNNNRTG	1 cut(s)	1248
SaqAI	TTAA	2 cut(s)	477, 1425
SatI	GCNGC	2 cut(s)	150, 300
Sau3AI	GATC	3 cut(s)	409, 763, 1141
Sau96I	GGNCC	6 cut(s)	139, 147, 310, 508, 1227, 1240
ScaI	AGTACT	1 cut(s)	1309
ScrFI	CCNGG	2 cut(s)	403, 1077
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	3 cut(s)	418, 648, 1267
SinI	GGWCC	3 cut(s)	139, 310, 1227
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SpeI	ACTAGT	1 cut(s)	1304
Sse9I	AATT	8 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1436
SsiI	CCGC	2 cut(s)	150, 346
SspI	AATATT	2 cut(s)	880, 985
SspMI	CTAG	1 cut(s)	1305
StyD4I	CCNGG	2 cut(s)	401, 1075
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	5 cut(s)	240, 743, 1015, 1033, 1087
TaiI	ACGT	3 cut(s)	136, 423, 608
TaqI	TCGA	3 cut(s)	183, 223, 235
TaqII	GACCGA	1 cut(s)	1399
TasI	AATT	8 cut(s)	9, 100, 472, 572, 945, 1056, 1068, 1436
TatI	WGTACW	3 cut(s)	650, 1162, 1307
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	452, 548, 1179
Tru1I	TTAA	2 cut(s)	477, 1425
Tru9I	TTAA	2 cut(s)	477, 1425
TscAI	CASTG	2 cut(s)	1189, 1270
TseFI	GTSAC	2 cut(s)	676, 737
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	676, 737
TspDTI	ATGAA	7 cut(s)	103, 479, 540, 872, 948, 1058, 1409
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	1189, 1270
VpaK11BI	GGWCC	3 cut(s)	139, 310, 1227
XapI	RAATTY	5 cut(s)	572, 945, 1056, 1068, 1436
XceI	RCATGY	1 cut(s)	1120
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	1 cut(s)	1305
ZrmI	AGTACT	1 cut(s)	1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.