RLG00000005475

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
67942819 .. 67946384
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005475

Sequence Viewer

Length: 1608 bp
ATGCCCATAATTCAAACCCACTCACCTTACTCTTTCAGCTCCTCCACTCTCAGACCCTCTTCCACATTCTTCACCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCCTTTCATCCGTACAAAACCTCCACGTTTGGTCCTCAGGGCCGCCGGAACCGATTACTATAAGACCCTCAACCTCGACAGAAATGCAACCCTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCGACAGTACCATCCTGATTTGAACAAGGGCTCTGGAGCTGAAGACAAGTTCAAAGAGATTAGTGCTGCATATGAGGTCCTATCAGATGAGGAGAAAAGAGCTTCGTATGACCGCTTTGGCGAGGCAGGCCTACAGGGAGAATATGGTTCTTCAAACATGGCTTCAGCCGGGGTGGATCCTTTTGACGTTTTTGATGCGTACTTTGGGGGAAGGGGTGAATCAGGAGGCATGAACTTCAATTTTAACTTCAATACGCCAAACTCAGGAAATCAGGGCCTTGACATTCGGTATGAACTGCAACTGAGCTTTGAGGAATCCATTTTTGGAGGACAGAGGGAATTTGAAGTTTCTTGTGTTGAGACTTGTGATACGTGTGGTGGAAGTGGTGCTAAATCTGATAACTGCATCAAATCATGTACTGGTTGTGGAGGAAGAGGAGGGGTGACAAAAGCTCAGAGAACACCATTTGGCATGATATCCATGGTATCTACCTGCTCAAAGTGTGAGGGTCAAGGTACAATAATAACTGATCCCTGCAAAAAATGCAATGGCAAGGGACAAGTACAATCAAAAAGAGCAATGGTTGTAACCATTCCAGCTGGTGTTAGTGATGGAGACTCAATGAAAGTTCAAGGGGAGGGGAATATTGATAAAAGAAGGGGTGTAGTTGGTGATGTCTACATAATGCTTCGTATAAATGAAAAGGCTGGAATTCGGAGGGAGGGTCTCAATCTATATTCAACTATAAATATTGATTATACTGAGGCTATTTTAGGAACTGTGATAAAGGTAGAAACTGTTGAAGGCATGAAAGAGCTTGAAATTCCTTCTGGAATTCAGCCTGGAGAAACAGTAAAGTTGTCCCGTATGGGGGTTCCAAACATGCGTAAACCTTCTGTTAGAGGAGATCATCACTTTGTTGTGAATGTACTTATTCCAAAGAGAATCAGTGGCGCAGAACGCACACTTGTTGAAGAACTCGCTTCACTTAGGACCTCGAAAAAGGGCCACTCAGGTGCTTCAAAAGGCACTGGGACACAAGATGGGAATTCTGACGTACAGAAAAGCAGAAACCACGCAACTAGTACTTCAAGGCAGGGGAAAAAATGTGTTTCGTCCTTGTGGAACTCTATAAAAGGCGTATTGGGGGGGAGGCAGTCGCAGGACAGATTTGCATCAGTTACCATGGACAGACCGGCACTTTTGTGGGGTTCAAGCAAGCCTGATTCCTTTTATATGGCATCAATTTTTGGAGTTTTAGTTGTAACTTGTATTTGTACCGCAATAGGAAAGACCCGAAACCTCACTTTATCGCAACACAAGGATAGTTCTCGTACTCATAGAACAAACAACAATGCTGACCGAAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

58.14

Weight (kDa)

9.25

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 54 - 115 4.8e-25 DnaJ domain
DnaJ_C PF01556 173 - 391 1.6e-36 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 200 - 264 1.6e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 912
AciI CCGC 3 cut(s) 150, 346, 1515
AclWI GGATC 3 cut(s) 404, 417, 758
AcsI RAATTY 5 cut(s) 572, 945, 1056, 1068, 1282
AcuI CTGAAG 3 cut(s) 221, 294, 381
AfiI CCNNNNNNNGG 3 cut(s) 497, 1104, 1105
AflIII ACRYGT 1 cut(s) 605
AhlI ACTAGT 1 cut(s) 1316
AjnI CCWGG 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AleI CACNNNNGTG 2 cut(s) 1248, 1438
AluBI AGCT 8 cut(s) 39, 229, 272, 335, 540, 686, 833, 1051
AluI AGCT 8 cut(s) 39, 229, 272, 335, 540, 686, 833, 1051
Alw26I GTCTC 3 cut(s) 587, 843, 965
AlwI GGATC 3 cut(s) 404, 417, 758
AoxI GGCC 4 cut(s) 147, 361, 508, 1240
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 5 cut(s) 572, 945, 1056, 1068, 1282
AspLEI GCGC 1 cut(s) 1190
AspS9I GGNCC 6 cut(s) 139, 147, 310, 508, 1227, 1240
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 5 cut(s) 15, 64, 461, 688, 917
AvaII GGWCC 3 cut(s) 139, 310, 1227
AxyI CCTNAGG 1 cut(s) 143
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 286
BccI CCATC 3 cut(s) 252, 839, 1271
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 587, 843, 965
BcuI ACTAGT 1 cut(s) 1316
BfaI CTAG 1 cut(s) 1317
BfmI CTRYAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 2 cut(s) 150, 300
BlsI GCNGC 2 cut(s) 151, 301
BmcAI AGTACT 1 cut(s) 1321
Bme1390I CCNGG 2 cut(s) 403, 1077
Bme18I GGWCC 3 cut(s) 139, 310, 1227
BmgT120I GGNCC 6 cut(s) 139, 147, 310, 508, 1227, 1240
BmiI GGNNCC 3 cut(s) 157, 411, 1110
BmrFI CCNGG 2 cut(s) 403, 1077
BmrI ACTGGG 1 cut(s) 1275
BmsI GCATC 4 cut(s) 418, 648, 1418, 1484
BmuI ACTGGG 1 cut(s) 1275
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 288, 1098
BpuMI CCSGG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 606
BsaBI GATNNNNATC 1 cut(s) 1408
BsaI GGTCTC 1 cut(s) 965
BsaJI CCNNGG 3 cut(s) 402, 714, 1419
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 8 cut(s) 112, 142, 943, 973, 1071, 1101, 1479, 1509
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 1104, 1105
Bse118I RCCGGY 1 cut(s) 1429
Bse1I ACTGG 2 cut(s) 658, 1270
Bse21I CCTNAGG 1 cut(s) 143
Bse3DI GCAATG 2 cut(s) 787, 819
Bse8I GATNNNNATC 1 cut(s) 1408
BseBI CCWGG 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 402, 714, 1419
BseGI GGATG 2 cut(s) 114, 244
BseJI GATNNNNATC 1 cut(s) 1408
BseLI CCNNNNNNNGG 3 cut(s) 497, 1104, 1105
BseMI GCAATG 2 cut(s) 787, 819
BseMII CTCAG 7 cut(s) 64, 157, 510, 527, 701, 987, 1260
BseNI ACTGG 2 cut(s) 658, 1270
BseRI GAGGAG 4 cut(s) 31, 338, 684, 1152
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 4 cut(s) 149, 363, 510, 1242
BsiSI CCGG 4 cut(s) 75, 153, 402, 1430
BslFI GGGAC 3 cut(s) 804, 1081, 1282
BslI CCNNNNNNNGG 3 cut(s) 497, 1104, 1105
BsmAI GTCTC 3 cut(s) 587, 843, 965
BsmFI GGGAC 3 cut(s) 804, 1081, 1282
BsnI GGCC 4 cut(s) 149, 363, 510, 1242
Bso31I GGTCTC 1 cut(s) 965
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 409, 763, 1141
Bsp19I CCATGG 2 cut(s) 714, 1419
BspACI CCGC 3 cut(s) 150, 346, 1515
BspANI GGCC 4 cut(s) 149, 363, 510, 1242
BspCNI CTCAG 7 cut(s) 63, 156, 509, 528, 700, 988, 1259
BspLI GGNNCC 3 cut(s) 157, 411, 1110
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 404, 417, 758
BspTNI GGTCTC 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 787, 819
BsrFI RCCGGY 1 cut(s) 1429
BsrI ACTGG 2 cut(s) 658, 1270
BssAI RCCGGY 1 cut(s) 1429
BssECI CCNNGG 3 cut(s) 402, 714, 1419
BssMI GATC 3 cut(s) 409, 763, 1141
BssT1I CCWWGG 2 cut(s) 714, 1419
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 4 cut(s) 240, 1015, 1033, 1087
Bst6I CTCTTC 2 cut(s) 64, 661
BstAPI GCANNNNNTGC 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 606
BstC8I GCNNGC 3 cut(s) 231, 361, 1454
BstDEI CTNAG 8 cut(s) 50, 143, 496, 536, 687, 996, 1223, 1246
BstDSI CCRYGG 2 cut(s) 714, 1419
BstF5I GGATG 2 cut(s) 114, 244
BstHHI GCGC 1 cut(s) 1190
BstKTI GATC 3 cut(s) 412, 766, 1144
BstMAI GTCTC 3 cut(s) 587, 843, 965
BstMBI GATC 3 cut(s) 409, 763, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 360, 777, 1194
BstNI CCWGG 1 cut(s) 1077
BstNSI RCATGY 1 cut(s) 1120
BstSCI CCNGG 2 cut(s) 401, 1075
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 4 cut(s) 149, 363, 510, 1242
BtgI CCRYGG 2 cut(s) 714, 1419
BtsCI GGATG 2 cut(s) 114, 244
BtsIMutI CAGTG 2 cut(s) 1189, 1263
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 231, 361, 1454
CfoI GCGC 1 cut(s) 1190
Cfr10I RCCGGY 1 cut(s) 1429
Cfr13I GGNCC 6 cut(s) 139, 147, 310, 508, 1227, 1240
CviAII CATG 8 cut(s) 391, 463, 648, 706, 715, 1042, 1117, 1420
DdeI CTNAG 8 cut(s) 50, 143, 496, 536, 687, 996, 1223, 1246
DpnI GATC 3 cut(s) 411, 765, 1143
DpnII GATC 3 cut(s) 409, 763, 1141
Eam1104I CTCTTC 2 cut(s) 64, 661
EarI CTCTTC 2 cut(s) 64, 661
Eco130I CCWWGG 2 cut(s) 714, 1419
Eco147I AGGCCT 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 965
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 139, 310, 1227
Eco57I CTGAAG 3 cut(s) 221, 294, 381
Eco81I CCTNAGG 1 cut(s) 143
EcoO109I RGGNCCY 3 cut(s) 310, 508, 1227
EcoRI GAATTC 3 cut(s) 945, 1068, 1282
EcoRII CCWGG 1 cut(s) 1075
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 2 cut(s) 714, 1419
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 714, 1419
FaeI CATG 8 cut(s) 394, 466, 651, 709, 718, 1045, 1120, 1423
FaqI GGGAC 3 cut(s) 804, 1081, 1282
FatI CATG 8 cut(s) 390, 462, 647, 705, 714, 1041, 1116, 1419
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 2 cut(s) 150, 300
FokI GGATG 2 cut(s) 101, 231
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 150, 300
FspBI CTAG 1 cut(s) 1317
GlaI GCGC 1 cut(s) 1189
GluI GCNGC 2 cut(s) 150, 300
GsuI CTGGAG 2 cut(s) 288, 1098
HaeIII GGCC 4 cut(s) 149, 363, 510, 1242
HapII CCGG 4 cut(s) 75, 153, 402, 1430
HhaI GCGC 1 cut(s) 1190
Hin1II CATG 8 cut(s) 394, 466, 651, 709, 718, 1045, 1120, 1423
Hin6I GCGC 1 cut(s) 1188
HinP1I GCGC 1 cut(s) 1188
HinfI GANTC 5 cut(s) 452, 548, 851, 1179, 1460
HpaII CCGG 4 cut(s) 75, 153, 402, 1430
HphI GGTGA 5 cut(s) 15, 64, 461, 688, 917
Hpy166II GTNNAC 2 cut(s) 913, 1124
Hpy188I TCNGA 6 cut(s) 53, 319, 631, 690, 951, 1288
Hpy188III TCNNGA 5 cut(s) 248, 267, 456, 498, 1065
Hpy8I GTNNAC 2 cut(s) 913, 1124
HpyAV CCTTC 6 cut(s) 196, 438, 885, 1031, 1071, 1137
HpyCH4III ACNGT 4 cut(s) 240, 1015, 1033, 1087
HpyCH4IV ACGT 4 cut(s) 133, 420, 605, 1290
HpyCH4V TGCA 7 cut(s) 194, 302, 532, 639, 771, 780, 1409
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 777, 1194
HpyF3I CTNAG 8 cut(s) 50, 143, 496, 536, 687, 996, 1223, 1246
HpySE526I ACGT 4 cut(s) 133, 420, 605, 1290
Hsp92II CATG 8 cut(s) 394, 466, 651, 709, 718, 1045, 1120, 1423
HspAI GCGC 1 cut(s) 1188
Kzo9I GATC 3 cut(s) 409, 763, 1141
LmnI GCTCC 3 cut(s) 44, 112, 269
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 4 cut(s) 418, 648, 1418, 1484
MaeI CTAG 1 cut(s) 1317
MaeII ACGT 4 cut(s) 133, 420, 605, 1290
MaeIII GTNAC 4 cut(s) 676, 820, 1414, 1498
MalI GATC 3 cut(s) 411, 765, 1143
MboI GATC 3 cut(s) 409, 763, 1141
MboII GAAGA 6 cut(s) 51, 61, 287, 375, 678, 1220
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 9 cut(s) 9, 100, 472, 572, 945, 1056, 1068, 1282, 1479
MlyI GAGTC 1 cut(s) 845
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 2 cut(s) 1248, 1438
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 4 cut(s) 75, 153, 402, 1430
MspR9I CCNGG 2 cut(s) 403, 1077
MvaI CCWGG 1 cut(s) 1077
MwoI GCNNNNNNNGC 3 cut(s) 360, 777, 1194
NciI CCSGG 1 cut(s) 403
NcoI CCATGG 2 cut(s) 714, 1419
NdeI CATATG 1 cut(s) 304
NdeII GATC 3 cut(s) 409, 763, 1141
NlaIII CATG 8 cut(s) 394, 466, 651, 709, 718, 1045, 1120, 1423
NlaIV GGNNCC 3 cut(s) 157, 411, 1110
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 1 cut(s) 1120
OliI CACNNNNGTG 2 cut(s) 1248, 1438
PceI AGGCCT 1 cut(s) 363
PfeI GAWTC 4 cut(s) 452, 548, 1179, 1460
PkrI GCNGC 2 cut(s) 151, 301
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
Ppu21I YACGTR 1 cut(s) 606
PpuMI RGGWCCY 2 cut(s) 310, 1227
Psp5II RGGWCCY 2 cut(s) 310, 1227
Psp6I CCWGG 1 cut(s) 1075
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 3 cut(s) 157, 411, 1110
PspPI GGNCC 6 cut(s) 139, 147, 310, 508, 1227, 1240
PspPPI RGGWCCY 2 cut(s) 310, 1227
PsuI RGATCY 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 833
RseI CAYNNNNRTG 2 cut(s) 1248, 1438
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 150, 300
Sau3AI GATC 3 cut(s) 409, 763, 1141
Sau96I GGNCC 6 cut(s) 139, 147, 310, 508, 1227, 1240
ScaI AGTACT 1 cut(s) 1321
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 403, 1077
SduI GDGCHC 1 cut(s) 266
SfaNI GCATC 4 cut(s) 418, 648, 1418, 1484
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 3 cut(s) 139, 310, 1227
SmiMI CAYNNNNRTG 2 cut(s) 1248, 1438
SpeI ACTAGT 1 cut(s) 1316
Sse9I AATT 9 cut(s) 9, 100, 472, 572, 945, 1056, 1068, 1282, 1479
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 3 cut(s) 150, 346, 1515
SspI AATATT 2 cut(s) 880, 985
SspMI CTAG 1 cut(s) 1317
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 401, 1075
StyI CCWWGG 2 cut(s) 714, 1419
TaaI ACNGT 4 cut(s) 240, 1015, 1033, 1087
TaiI ACGT 4 cut(s) 136, 423, 608, 1293
TaqI TCGA 4 cut(s) 183, 223, 235, 1232
TasI AATT 9 cut(s) 9, 100, 472, 572, 945, 1056, 1068, 1282, 1479
TatI WGTACW 4 cut(s) 650, 796, 1162, 1319
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 4 cut(s) 452, 548, 1179, 1460
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 1189, 1270
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 6 cut(s) 103, 479, 540, 872, 948, 1058
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 1189, 1270
VpaK11BI GGWCC 3 cut(s) 139, 310, 1227
XapI RAATTY 5 cut(s) 572, 945, 1056, 1068, 1282
XceI RCATGY 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 912
XspI CTAG 1 cut(s) 1317
ZrmI AGTACT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.