RLG00000025103

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001723
Physical Location & Seq
Reverse (-)
42001940 .. 42003792
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025103

Sequence Viewer

Length: 894 bp
ATGAGCATGGGAGAAACATGGGAGTGCCCCCAACCTAAAACCTCTGCAAAACCCAAAATCTCTCACTTTCTCACCCCATCCAAGTTTTCTGTCATCTTTCTCCACTTTCCATTCGACTCTAACTCTCCAAGAATCAAGCATGGCCATAATCCAAACCCACTTCACCTCCAAGCTCCCCCAATCCCCAACTCCATTCTCAGCTCCGGAAAAGACCCAACTTTGAAACCCAATTTCGCTCATTTCACCCGTACAAAACCTCCACGTTTGGTCATCAGGGCCGCCGGAACTGATTACTATAAGACCCTCAATCTCGACAGAAATGCCACCTTGAAGGAGATAAAGACATCTTATCGAAAGCTCGCTCTACAGTATCATCCTGATTTGAACAAGGACTCTGGAGCTGAGGAAAAGTTCAGAGAGATTACTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGAACTGCATATGATCGCTCTGGTGATGTAGGCTTACAGGGAGATTATGGTTCTTGGACGACAGGTTCAACCGGGGTCACTTTTCAGTTCTATGGAATGGGTGAATCGGGAGGCATTAACGTCAATGTCAAGTCCACTGGAAGCCAGATGTATGAAATTCGGTTTAAAGAACCCATTGTAATTAAAGTTTTGTTTGCTGAGGCATTTGAAACTTGTGGTGGAAGTGGAGCAGAATCTAAATCTAATGTTGAGGCATGTGATGCTTGTGCTGGGAGTGGAGCTGAATCTGATAACTGCATCAAATCATGTACTGGTTCTGGAGGAACAGGAGGGCTCGGCGCTGTGATAGCTACTGCCATGACAGTATCAATCATTCTGTTTTTGGGACTTGCAGCCATTATTCCAGGTTCTAGTCTTTACCGTTTTGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

298

Amino Acids

32.01

Weight (kDa)

8.13

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 97 - 158 8.9e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 203
AciI CCGC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 615
AfaI GTAC 2 cut(s) 250, 769
AgsI TTSAA 5 cut(s) 223, 331, 385, 528, 668
AjnI CCWGG 1 cut(s) 862
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 6 cut(s) 173, 201, 358, 401, 740, 809
AluI AGCT 6 cut(s) 173, 201, 358, 401, 740, 809
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 3 cut(s) 142, 276, 886
ApeKI GCWGC 2 cut(s) 428, 851
ApoI RAATTY 1 cut(s) 615
AspLEI GCGC 1 cut(s) 800
AspS9I GGNCC 2 cut(s) 276, 439
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 5 cut(s) 64, 155, 235, 494, 572
AvaII GGWCC 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 144
BanII GRGCYC 1 cut(s) 795
BbvCI CCTCAGC 2 cut(s) 402, 657
BbvI GCAGC 2 cut(s) 415, 863
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 864
BcnI CCSGG 1 cut(s) 532
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 2 cut(s) 365, 890
BfoI RGCGCY 1 cut(s) 801
BisI GCNGC 3 cut(s) 279, 429, 852
BlsI GCNGC 3 cut(s) 280, 430, 853
Bme1390I CCNGG 2 cut(s) 532, 864
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 276, 439
BmrFI CCNGG 2 cut(s) 532, 864
BmsI GCATC 2 cut(s) 709, 765
BpmI CTGGAG 2 cut(s) 417, 798
Bpu10I CCTNAGC 2 cut(s) 402, 657
BpuMI CCSGG 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 531
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 241, 271
Bse1I ACTGG 2 cut(s) 601, 775
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 77, 373
BseMII CTCAG 3 cut(s) 211, 393, 648
BseNI ACTGG 2 cut(s) 601, 775
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 415, 863
BseYI CCCAGC 1 cut(s) 728
BshFI GGCC 3 cut(s) 144, 278, 888
BsiSI CCGG 3 cut(s) 204, 282, 531
BslFI GGGAC 1 cut(s) 858
BsmFI GGGAC 1 cut(s) 858
BsnI GGCC 3 cut(s) 144, 278, 888
Bsp1286I GDGCHC 2 cut(s) 29, 795
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 1 cut(s) 279
BspANI GGCC 3 cut(s) 144, 278, 888
BspCNI CTCAG 3 cut(s) 210, 394, 649
BspEI TCCGGA 1 cut(s) 203
BsrI ACTGG 2 cut(s) 601, 775
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 3 cut(s) 369, 823, 881
BstAPI GCANNNNNTGC 1 cut(s) 719
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 197, 402, 657
BstF5I GGATG 2 cut(s) 77, 373
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 2 cut(s) 719, 806
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 530, 862
BstSFI CTRYAG 2 cut(s) 365, 890
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 415, 863
BsuRI GGCC 3 cut(s) 144, 278, 888
BtsCI GGATG 2 cut(s) 77, 373
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 800
Cfr13I GGNCC 2 cut(s) 276, 439
Csp6I GTAC 2 cut(s) 249, 768
CviAII CATG 6 cut(s) 7, 18, 140, 714, 765, 817
CviQI GTAC 2 cut(s) 249, 768
DdeI CTNAG 3 cut(s) 197, 402, 657
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 795
FaeI CATG 6 cut(s) 10, 21, 143, 717, 768, 820
FaqI GGGAC 1 cut(s) 858
FatI CATG 6 cut(s) 6, 17, 139, 713, 764, 816
FauNDI CATATG 2 cut(s) 433, 469
Fnu4HI GCNGC 3 cut(s) 279, 429, 852
FokI GGATG 2 cut(s) 64, 360
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 279, 429, 852
FspBI CTAG 1 cut(s) 870
GlaI GCGC 1 cut(s) 799
GluI GCNGC 3 cut(s) 279, 429, 852
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 2 cut(s) 417, 798
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 3 cut(s) 144, 278, 888
HapII CCGG 3 cut(s) 204, 282, 531
HhaI GCGC 1 cut(s) 800
Hin1II CATG 6 cut(s) 10, 21, 143, 717, 768, 820
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HinfI GANTC 6 cut(s) 116, 132, 392, 563, 692, 743
HpaII CCGG 3 cut(s) 204, 282, 531
HphI GGTGA 5 cut(s) 64, 155, 235, 494, 572
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 416, 448, 748
Hpy188III TCNNGA 6 cut(s) 204, 311, 377, 396, 567, 777
Hpy8I GTNNAC 1 cut(s) 594
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 3 cut(s) 369, 823, 881
HpyCH4IV ACGT 2 cut(s) 262, 579
HpyCH4V TGCA 5 cut(s) 47, 431, 467, 756, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 806
HpyF3I CTNAG 3 cut(s) 197, 402, 657
HpySE526I ACGT 2 cut(s) 262, 579
Hsp92II CATG 6 cut(s) 10, 21, 143, 717, 768, 820
HspAI GCGC 1 cut(s) 798
Kpn2I TCCGGA 1 cut(s) 203
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 5 cut(s) 178, 206, 398, 686, 737
Lsp1109I GCAGC 2 cut(s) 415, 863
LweI GCATC 2 cut(s) 709, 765
MaeI CTAG 1 cut(s) 870
MaeII ACGT 2 cut(s) 262, 579
MaeIII GTNAC 1 cut(s) 535
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 29, 795
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 3 cut(s) 229, 615, 639
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 2 cut(s) 110, 386
Mox20I TGGCCA 1 cut(s) 144
MroI TCCGGA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 144
MseI TTAA 3 cut(s) 576, 624, 642
MslI CAYNNNNRTG 1 cut(s) 22
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 3 cut(s) 204, 282, 531
MspR9I CCNGG 2 cut(s) 532, 864
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 719, 806
NciI CCSGG 1 cut(s) 532
NdeI CATATG 2 cut(s) 433, 469
NdeII GATC 1 cut(s) 472
NlaIII CATG 6 cut(s) 10, 21, 143, 717, 768, 820
NmeAIII GCCGAG 1 cut(s) 774
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 717
PfeI GAWTC 4 cut(s) 132, 563, 692, 743
PkrI GCNGC 3 cut(s) 280, 430, 853
PleI GAGTC 2 cut(s) 110, 386
PpsI GAGTC 2 cut(s) 110, 386
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 862
PspPI GGNCC 2 cut(s) 276, 439
PspPPI RGGWCCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 250, 769
RsaNI GTAC 2 cut(s) 249, 768
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 3 cut(s) 576, 624, 642
SatI GCNGC 3 cut(s) 279, 429, 852
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 2 cut(s) 276, 439
SchI GAGTC 2 cut(s) 110, 386
ScrFI CCNGG 2 cut(s) 532, 864
SduI GDGCHC 2 cut(s) 29, 795
SfaNI GCATC 2 cut(s) 709, 765
SfcI CTRYAG 2 cut(s) 365, 890
SinI GGWCC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 22
Sse9I AATT 3 cut(s) 229, 615, 639
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 530, 862
TaaI ACNGT 3 cut(s) 369, 823, 881
TaiI ACGT 2 cut(s) 265, 582
TaqI TCGA 3 cut(s) 114, 312, 352
TasI AATT 3 cut(s) 229, 615, 639
TatI WGTACW 1 cut(s) 767
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 4 cut(s) 132, 563, 692, 743
Tru1I TTAA 3 cut(s) 576, 624, 642
Tru9I TTAA 3 cut(s) 576, 624, 642
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 428, 851
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 627
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 615
XceI RCATGY 1 cut(s) 717
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.