Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

7885637 .. 7886876

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATCGCCGGAGTATTGCGCCGATCTTCACTCCCGTCGAGGCAGACTCTCTCCGCCGCGTTAGCCTCCTTCAATTCGTGTATTTCGCACAATCTCACTCCAGCCACCACCGGAGCTTCCGTCAGCTCTCGATTCACTCTCGCGTCGTCTCCTAACTCGTTTGGCATCAGAGCGAGGAACATCCACATTAGATCTGAGCCGTCGATGATTGTTCCCGCAGGAATCGCGTCACAAGGTTACGCCACTGTCACAAAGGATCGCAAAAACGAGATTAAGAAAGCTAAGATTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTCCAGAAAGAGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACAAAGATTTGTATAGCGATTCGGTCTTTTGTTAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTCGCAATGCCCGATACACGAACTCTGTACACGGTGCTAAGATCGCCTCACGTCGATAAGAAGTCTAGAGAACAGTTTGAGATGAGGTTCAAGAAACGGTTTCTTGTCATCAAAGCTCAGAGTCATGAGTTGAGCAAGAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAACTCCAGTTCCATTGCAAGACCCGTTTGGATATGACTCAAGTGTTAGGCAACATCAATGGCTCCACCACCAATGCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

241

Amino Acids

27.09

Weight (kDa)

10.5

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	152 - 199	6.8e-11	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	59, 143, 227
AciI	CCGC	3 cut(s)	54, 57, 216
AclI	AACGTT	1 cut(s)	616
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	73, 550
AjiI	CACGTC	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	116, 126, 281, 431, 575, 601, 635
AluI	AGCT	7 cut(s)	116, 126, 281, 431, 575, 601, 635
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	21
AsuC2I	CCSGG	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	525
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	2 cut(s)	57, 351
BlsI	GCNGC	2 cut(s)	58, 352
Bme1390I	CCNGG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	4 cut(s)	84, 282, 323, 632
BpuEI	CTTGAG	1 cut(s)	666
BpuMI	CCSGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	2 cut(s)	471, 655
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	471, 655
BseMII	CTCAG	2 cut(s)	186, 590
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	362
Bsh1236I	CGCG	3 cut(s)	59, 143, 227
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	3 cut(s)	9, 111, 419
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
BspACI	CCGC	3 cut(s)	54, 57, 216
BspCNI	CTCAG	2 cut(s)	187, 589
BspFNI	CGCG	3 cut(s)	59, 143, 227
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	471, 655
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	649
BssMI	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
Bst4CI	ACNGT	4 cut(s)	247, 493, 534, 558
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	4 cut(s)	195, 282, 497, 576
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	3 cut(s)	59, 143, 227
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	6 cut(s)	6, 26, 194, 259, 333, 503
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 224, 502
BstSCI	CCNGG	1 cut(s)	417
BstUI	CGCG	3 cut(s)	59, 143, 227
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	429
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	21
CseI	GACGC	2 cut(s)	132, 216
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	584
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	4 cut(s)	195, 282, 497, 576
DpnI	GATC	6 cut(s)	5, 25, 193, 258, 332, 502
DpnII	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	587
FaiI	YATR	4 cut(s)	395, 585, 642, 677
FatI	CATG	1 cut(s)	583
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	57, 351
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	2 cut(s)	57, 351
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	57, 351
GsuI	CTGGAG	4 cut(s)	84, 282, 323, 632
HapII	CCGG	3 cut(s)	9, 111, 419
HgaI	GACGC	2 cut(s)	132, 216
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	587
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	6 cut(s)	46, 132, 222, 400, 580, 679
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	9, 111, 419
Hpy166II	GTNNAC	2 cut(s)	415, 489
Hpy188I	TCNGA	4 cut(s)	170, 196, 311, 579
Hpy188III	TCNNGA	6 cut(s)	129, 299, 340, 525, 550, 584
Hpy8I	GTNNAC	2 cut(s)	415, 489
Hpy99I	CGWCG	4 cut(s)	40, 148, 205, 515
HpyAV	CCTTC	2 cut(s)	79, 319
HpyCH4III	ACNGT	4 cut(s)	247, 493, 534, 558
HpyCH4IV	ACGT	2 cut(s)	510, 616
HpyCH4V	TGCA	1 cut(s)	660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 224, 502
HpyF3I	CTNAG	4 cut(s)	195, 282, 497, 576
HpySE526I	ACGT	2 cut(s)	510, 616
Hsp92II	CATG	1 cut(s)	587
HspAI	GCGC	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
LmnI	GCTCC	3 cut(s)	113, 632, 710
LpnPI	CCDG	8 cut(s)	22, 114, 124, 204, 312, 353, 432, 662
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	2 cut(s)	510, 616
MaeIII	GTNAC	3 cut(s)	228, 236, 247
MalI	GATC	6 cut(s)	5, 25, 193, 258, 332, 502
MboI	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
MboII	GAAGA	3 cut(s)	18, 368, 431
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	2 cut(s)	73, 291
MlyI	GAGTC	3 cut(s)	40, 589, 673
MnlI	CCTC	8 cut(s)	33, 76, 168, 340, 453, 456, 516, 537
MseI	TTAA	4 cut(s)	273, 288, 414, 611
MspI	CCGG	3 cut(s)	9, 111, 419
MspR9I	CCNGG	1 cut(s)	419
MvnI	CGCG	3 cut(s)	59, 143, 227
MwoI	GCNNNNNNNGC	3 cut(s)	62, 224, 502
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
NlaIII	CATG	1 cut(s)	587
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	2 cut(s)	228, 247
PagI	TCATGA	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	132, 222, 400
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	58, 352
PleI	GAGTC	3 cut(s)	40, 588, 673
PpsI	GAGTC	3 cut(s)	40, 588, 673
Psp124BI	GAGCTC	1 cut(s)	637
Psp1406I	AACGTT	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	4 cut(s)	273, 288, 414, 611
SatI	GCNGC	2 cut(s)	57, 351
Sau3AI	GATC	6 cut(s)	3, 23, 191, 256, 330, 500
SchI	GAGTC	3 cut(s)	40, 589, 673
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	681
SmoI	CTYRAG	1 cut(s)	681
Sse9I	AATT	2 cut(s)	73, 291
SsiI	CCGC	3 cut(s)	54, 57, 216
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	247, 493, 534, 558
TaiI	ACGT	2 cut(s)	513, 619
TaqI	TCGA	4 cut(s)	38, 130, 203, 513
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	73, 291
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	132, 222, 400
Tru1I	TTAA	4 cut(s)	273, 288, 414, 611
Tru9I	TTAA	4 cut(s)	273, 288, 414, 611
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	228, 247
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	228, 247
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	291
XbaI	TCTAGA	1 cut(s)	524
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.