Rorug02G0283900

ribosomal protein s10

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
30876311 .. 30881734
5424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0283900.1

Sequence Viewer

Length: 1191 bp
ATGGCTATAAATTGCTTGAGAGCAATACCCAAAATTCAGCATTTGGAAATCACCAGCTGCTCACACTCATTCTCCAACTCCTTCCTTTTCTCTTCCAACTCCAAACCCAAAAGGGTCTTTTCATCAATTCGAGCTTCAATGTCTTACGAGAAGGAGCTCGCTGCTGCCAAGAAAGCTGCCTCTGTCGCCGCTCGCCTCTGCCAGAAGGTACAACAGGCGCTTTTGCAGTCAGATGTTCATTCAAAATCAGATAAAAGTCCTGTCACAGTGGCCGATTATGGTTCACAGGCTCTTGTTAGTTTTGTTCTGGAAAGGGAACTTCCTTCGGAATCATTCTCTTTAGTAGCTGAGGAGGATTCGGGAGATCTCCGAATAGACAGTGGCAGGGAAACACTAGAACGCATCACAAAACTTGTTAATGATACTCTTGCCAACAGTGACAGTTATAGTGATTCTAATTTGACCACTGAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCGGCACTGGGTTTTAGATCCCATTGACGGTACCAAAGGGTTTCTTAGAGGAGACCAATATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCTTGTCCAAATCTCCCCCTGGCGTCCATTAGTGGTGATAATCAGCAGTTTTCTCATGATAAAATTGGTTGCCTTTTCTTTGCAAAACTTGGTGCAGGAACATATATGCAGCCATTGGATGGTTCATCACCGCTAAAGGTGCATGTCAGTGCTACTGAAAATCCTGAAGACGCCTCATTCTTTGAGTCTTATGAAGCAGCACACTCCTTGCACGGCTTGTCTAGCACCATTGCCAAGAAACTTGGAGTCAAAGCACCGCCAGTTAGAATTGACAGCCAGGCAAAGTATGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGCGAGAAAATATGGGATCATGCTGCTGGGTGCATTGTTGTTACTGAAGCTGGTGGTGTAGTCACAGATGCTGCAGGAAATCCATTGGACTTTTCAAAAGGGAGGTATCTGGATCTTGAAACAGGCATAATTGTTACCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAAAGAATCCTTGGAGGAAGAGAAAGTTTCATCTTTGTGA

Protein Analysis

396

Amino Acids

42.64

Weight (kDa)

5.97

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 84 - 387 4.7e-48 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 1 cut(s) 981
AciI CCGC 3 cut(s) 189, 764, 890
AclWI GGATC 3 cut(s) 533, 1002, 1098
AcoI YGGCCR 2 cut(s) 270, 520
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 4 cut(s) 489, 525, 819, 1044
AcyI GRCGYC 2 cut(s) 656, 804
AfaI GTAC 2 cut(s) 210, 553
AfiI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
AgsI TTSAA 5 cut(s) 138, 243, 1074, 1097, 1144
AjnI CCWGG 3 cut(s) 630, 651, 909
AluBI AGCT 6 cut(s) 57, 134, 157, 176, 347, 1028
AluI AGCT 6 cut(s) 57, 134, 157, 176, 347, 1028
Alw21I GWGCWC 2 cut(s) 159, 480
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 3 cut(s) 533, 1002, 1098
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 2 cut(s) 270, 520
ApeKI GCWGC 8 cut(s) 57, 161, 164, 176, 742, 830, 1001, 1049
ApoI RAATTY 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 43, 680, 753
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 159, 480
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 8 cut(s) 44, 148, 151, 163, 754, 842, 988, 1036
BccI CCATC 3 cut(s) 746, 935, 1141
BceAI ACGGC 1 cut(s) 862
BciT130I CCWGG 3 cut(s) 632, 653, 911
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 395, 855
BfmI CTRYAG 1 cut(s) 1050
BfoI RGCGCY 1 cut(s) 221
BglII AGATCT 1 cut(s) 364
BisI GCNGC 9 cut(s) 58, 162, 165, 177, 189, 743, 831, 1002, 1050
BlsI GCNGC 9 cut(s) 59, 163, 166, 178, 190, 744, 832, 1003, 1051
Bme1390I CCNGG 3 cut(s) 632, 653, 911
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 3 cut(s) 632, 653, 911
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 3 cut(s) 411, 1036, 1119
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 807
Bpu10I CCTNAGC 2 cut(s) 348, 479
BpuEI CTTGAG 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 656, 804
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 651, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
Bse118I RCCGGY 1 cut(s) 522
Bse1I ACTGG 3 cut(s) 533, 606, 893
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 3 cut(s) 632, 653, 911
BseDI CCNNGG 2 cut(s) 651, 1161
BseGI GGATG 2 cut(s) 610, 757
BseLI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 2 cut(s) 339, 493
BseNI ACTGG 3 cut(s) 533, 606, 893
BseRI GAGGAG 3 cut(s) 365, 585, 951
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 8 cut(s) 44, 148, 151, 163, 754, 842, 988, 1036
BseYI CCCAGC 1 cut(s) 1004
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 981
BshFI GGCC 2 cut(s) 272, 522
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 2 cut(s) 159, 480
BsiSI CCGG 1 cut(s) 523
BslI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
BsmAI GTCTC 1 cut(s) 567
BsnI GGCC 2 cut(s) 272, 522
Bso31I GGTCTC 1 cut(s) 567
Bsp1286I GDGCHC 3 cut(s) 159, 480, 928
Bsp143I GATC 4 cut(s) 364, 538, 994, 1090
Bsp68I TCGCGA 1 cut(s) 981
BspACI CCGC 3 cut(s) 189, 764, 890
BspANI GGCC 2 cut(s) 272, 522
BspCNI CTCAG 2 cut(s) 340, 492
BspFNI CGCG 1 cut(s) 981
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 553
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 3 cut(s) 533, 1002, 1098
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 522
BsrI ACTGG 3 cut(s) 533, 606, 893
BssAI RCCGGY 1 cut(s) 522
BssECI CCNNGG 2 cut(s) 651, 1161
BssMI GATC 4 cut(s) 364, 538, 994, 1090
BssNI GRCGYC 2 cut(s) 656, 804
BssT1I CCWWGG 1 cut(s) 1161
Bst2UI CCWGG 3 cut(s) 632, 653, 911
Bst4CI ACNGT 5 cut(s) 268, 380, 437, 443, 551
Bst6I CTCTTC 2 cut(s) 97, 1164
BstACI GRCGYC 2 cut(s) 656, 804
BstC8I GCNNGC 3 cut(s) 159, 193, 524
BstDEI CTNAG 3 cut(s) 348, 479, 566
BstF5I GGATG 2 cut(s) 610, 757
BstFNI CGCG 1 cut(s) 981
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 367, 541, 997, 1093
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 4 cut(s) 364, 538, 994, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
BstNI CCWGG 3 cut(s) 632, 653, 911
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 3 cut(s) 630, 651, 909
BstSFI CTRYAG 1 cut(s) 1050
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 981
BstV1I GCAGC 8 cut(s) 44, 148, 151, 163, 754, 842, 988, 1036
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 3 cut(s) 364, 538, 1090
BstYI RGATCY 3 cut(s) 364, 538, 1090
BsuRI GGCC 2 cut(s) 272, 522
BtsCI GGATG 2 cut(s) 610, 757
BtsIMutI CAGTG 6 cut(s) 273, 385, 442, 465, 526, 787
BtuMI TCGCGA 1 cut(s) 981
Cac8I GCNNGC 3 cut(s) 159, 193, 524
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 522
CseI GACGC 2 cut(s) 645, 812
Csp6I GTAC 2 cut(s) 209, 552
CviAII CATG 3 cut(s) 689, 776, 998
CviQI GTAC 2 cut(s) 209, 552
DdeI CTNAG 3 cut(s) 348, 479, 566
DpnI GATC 4 cut(s) 366, 540, 996, 1092
DpnII GATC 4 cut(s) 364, 538, 994, 1090
EaeI YGGCCR 2 cut(s) 270, 520
Eam1104I CTCTTC 2 cut(s) 97, 1164
EarI CTCTTC 2 cut(s) 97, 1164
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 1161
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 4 cut(s) 489, 525, 819, 1044
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 630, 651, 909
EcoRV GATATC 1 cut(s) 977
EcoT14I CCWWGG 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 1161
FaeI CATG 3 cut(s) 692, 779, 1001
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FatI CATG 3 cut(s) 688, 775, 997
Fnu4HI GCNGC 9 cut(s) 58, 162, 165, 177, 189, 743, 831, 1002, 1050
FokI GGATG 2 cut(s) 617, 764
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 9 cut(s) 58, 162, 165, 177, 189, 743, 831, 1002, 1050
FspBI CTAG 2 cut(s) 395, 855
GlaI GCGC 1 cut(s) 219
GluI GCNGC 9 cut(s) 58, 162, 165, 177, 189, 743, 831, 1002, 1050
GsaI CCCAGC 1 cut(s) 1008
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 2 cut(s) 272, 522
HapII CCGG 1 cut(s) 523
HgaI GACGC 2 cut(s) 645, 812
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 2 cut(s) 656, 804
Hin1II CATG 3 cut(s) 692, 779, 1001
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 6 cut(s) 329, 356, 452, 818, 879, 1157
HpaII CCGG 1 cut(s) 523
HphI GGTGA 3 cut(s) 43, 680, 753
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 5 cut(s) 232, 250, 328, 371, 505
Hpy188III TCNNGA 9 cut(s) 308, 360, 689, 797, 933, 980, 1088, 1094, 1141
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 7 cut(s) 91, 145, 199, 333, 500, 602, 1138
HpyCH4III ACNGT 5 cut(s) 268, 380, 437, 443, 551
HpyCH4V TGCA 8 cut(s) 226, 716, 728, 742, 775, 844, 1011, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
HpyF3I CTNAG 3 cut(s) 348, 479, 566
Hsp92I GRCGYC 2 cut(s) 656, 804
Hsp92II CATG 3 cut(s) 692, 779, 1001
HspAI GCGC 1 cut(s) 218
KpnI GGTACC 1 cut(s) 555
KroI GCCGGC 1 cut(s) 522
KroNI GCCGGC 1 cut(s) 524
Kzo9I GATC 4 cut(s) 364, 538, 994, 1090
LmnI GCTCC 2 cut(s) 154, 944
Lsp1109I GCAGC 8 cut(s) 44, 148, 151, 163, 754, 842, 988, 1036
LweI GCATC 3 cut(s) 411, 1036, 1119
MaeI CTAG 2 cut(s) 395, 855
MaeIII GTNAC 5 cut(s) 262, 437, 1018, 1039, 1111
MalI GATC 4 cut(s) 366, 540, 996, 1092
MbiI CCGCTC 1 cut(s) 191
MboI GATC 4 cut(s) 364, 538, 994, 1090
MboII GAAGA 5 cut(s) 84, 482, 812, 947, 1181
MflI RGATCY 3 cut(s) 364, 538, 1090
MhlI GDGCHC 3 cut(s) 159, 480, 928
MluCI AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
MlyI GAGTC 2 cut(s) 827, 888
MmeI TCCRAC 2 cut(s) 99, 120
MnlI CCTC 9 cut(s) 190, 206, 343, 346, 563, 817, 929, 1074, 1159
MroNI GCCGGC 1 cut(s) 522
MseI TTAA 2 cut(s) 417, 1152
MslI CAYNNNNRTG 2 cut(s) 780, 1186
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 3 cut(s) 632, 653, 911
MvaI CCWGG 3 cut(s) 632, 653, 911
MvnI CGCG 1 cut(s) 981
MwoI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
NaeI GCCGGC 1 cut(s) 524
NdeII GATC 4 cut(s) 364, 538, 994, 1090
NgoMIV GCCGGC 1 cut(s) 522
NlaIII CATG 3 cut(s) 692, 779, 1001
NlaIV GGNNCC 1 cut(s) 553
NmuCI GTSAC 3 cut(s) 262, 437, 1039
NruI TCGCGA 1 cut(s) 981
NspI RCATGY 1 cut(s) 779
PagI TCATGA 1 cut(s) 688
PdiI GCCGGC 1 cut(s) 524
PfeI GAWTC 4 cut(s) 329, 356, 452, 1157
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 9 cut(s) 59, 163, 166, 178, 190, 744, 832, 1003, 1051
PleI GAGTC 2 cut(s) 826, 887
PpsI GAGTC 2 cut(s) 826, 887
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 3 cut(s) 630, 651, 909
PspFI CCCAGC 1 cut(s) 1004
PspGI CCWGG 3 cut(s) 630, 651, 909
PspN4I GGNNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 1054
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 3 cut(s) 364, 538, 1090
PvuII CAGCTG 1 cut(s) 57
RruI TCGCGA 1 cut(s) 981
RsaI GTAC 2 cut(s) 210, 553
RsaNI GTAC 2 cut(s) 209, 552
RseI CAYNNNNRTG 2 cut(s) 780, 1186
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 417, 1152
SatI GCNGC 9 cut(s) 58, 162, 165, 177, 189, 743, 831, 1002, 1050
Sau3AI GATC 4 cut(s) 364, 538, 994, 1090
SchI GAGTC 2 cut(s) 827, 888
ScrFI CCNGG 3 cut(s) 632, 653, 911
SduI GDGCHC 3 cut(s) 159, 480, 928
SfaNI GCATC 3 cut(s) 411, 1036, 1119
SfcI CTRYAG 1 cut(s) 1050
SmiMI CAYNNNNRTG 2 cut(s) 780, 1186
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
SsiI CCGC 3 cut(s) 189, 764, 890
SspMI CTAG 2 cut(s) 395, 855
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 630, 651, 909
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 5 cut(s) 268, 380, 437, 443, 551
TaqI TCGA 1 cut(s) 130
TasI AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 4 cut(s) 329, 356, 452, 1157
Tru1I TTAA 2 cut(s) 417, 1152
Tru9I TTAA 2 cut(s) 417, 1152
TscAI CASTG 6 cut(s) 273, 385, 442, 472, 533, 787
TseFI GTSAC 3 cut(s) 262, 437, 1039
TseI GCWGC 8 cut(s) 57, 161, 164, 176, 742, 830, 1001, 1049
Tsp45I GTSAC 3 cut(s) 262, 437, 1039
TspDTI ATGAA 6 cut(s) 111, 227, 621, 747, 840, 1170
TspRI CASTG 6 cut(s) 273, 385, 442, 472, 533, 787
Van91I CCANNNNNTGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 33
XceI RCATGY 1 cut(s) 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XspI CTAG 2 cut(s) 395, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.