Prupe.4G282300_v2.0.a1

Ribosomal protein S10p/S20e

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
24076819 .. 24079139
2321 bp
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UTR
Exon/CDS
Intron
Prupe.4G282300.1

Sequence Viewer

Length: 324 bp
ATGGCGACCAAGATATGCGTAGCGATTCGATCTTTTCATCACCCAAACCTTTTGTGGGGCCTTCCACCTTCCACACGGAGGATTGCATTGCCTGAATCACGAGTCTTATATACCGTGTTGCGATCACCTCATATTGATAAAAAGTCCAGAGAGCAGTTCAAAATGGAAATCAAGAAACAATATCTCGTCATAAAAACACAACCGCATGAATTGCAGAAGAAGTTCTTTTGGCTAAAGCGCCAACGTATATTTGGAGCTCAATATGAACTCCTATTTTCTTGCAAGACCCGCTTGGATAAGGAAAAACTGCAGGGATTGCTCTGA

Protein Analysis

108

Amino Acids

12.82

Weight (kDa)

10.33

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 289
AfiI CCNNNNNNNGG 2 cut(s) 55, 78
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 259
AoxI GGCC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 32, 117
BanII GRGCYC 1 cut(s) 259
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 78
Bse3DI GCAATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 55, 78
BseMI GCAATG 1 cut(s) 86
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 55, 78
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 29, 122
BspACI CCGC 2 cut(s) 203, 289
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 86
BssMI GATC 2 cut(s) 29, 122
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 115
BstAPI GCANNNNNTGC 2 cut(s) 211, 316
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 32, 125
BstMBI GATC 2 cut(s) 29, 122
BstMWI GCNNNNNNNGC 3 cut(s) 211, 288, 316
BstSFI CTRYAG 1 cut(s) 308
BsuRI GGCC 1 cut(s) 60
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 1 cut(s) 206
CviJI RGCY 3 cut(s) 60, 232, 257
CviKI_1 RGCY 3 cut(s) 60, 232, 257
DpnI GATC 2 cut(s) 31, 124
DpnII GATC 2 cut(s) 29, 122
Ecl136II GAGCTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 1 cut(s) 209
FaiI YATR 8 cut(s) 16, 109, 111, 132, 191, 207, 248, 264
FalI AAGNNNNNCTT 4 cut(s) 209, 241, 275, 307
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 259
GlaI GCGC 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 3 cut(s) 25, 95, 102
HphI GGTGA 2 cut(s) 32, 117
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 3 cut(s) 99, 147, 172
HpyAV CCTTC 2 cut(s) 71, 78
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 86, 214, 282, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 288, 316
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 29, 122
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 105, 160, 296
MaeII ACGT 1 cut(s) 244
MalI GATC 2 cut(s) 31, 124
MboI GATC 2 cut(s) 29, 122
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 2 cut(s) 72, 138
MroXI GAANNNNTTC 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 211, 288, 316
NdeII GATC 2 cut(s) 29, 122
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 25, 95
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 29, 122
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 111
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 51, 70, 130, 247, 259
SfcI CTRYAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 209
SsiI CCGC 2 cut(s) 203, 289
SstI GAGCTC 1 cut(s) 259
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 28
TasI AATT 1 cut(s) 209
TfiI GAWTC 2 cut(s) 25, 95
TspDTI ATGAA 3 cut(s) 26, 222, 279
TspGWI ACGGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 2 cut(s) 51, 248
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.