Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

7465683 .. 7479334

Gene Structure 13652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACGGGAGGAGAAGATGTCGTGGTGGTATGTAAGCGTCGAGTCTGCAGCTCGGTGACTGGTCTGAATCTGGTCATTGAGGCTGGAGCAGCAGTAATGACAACCAGAATATGCGTTGCGATTCGATCTTTTGCGAAACACCCATTGGGACTTCCGCCTTGCACGCGGAGGATTCGGTTGCCTGACACACGAGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGAGAACAGTTTCATATGATAACCAAGAAACAACTTCTCGTCATAGACACGAAGGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTTAATTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGCTTAATAAGGAAACTGAAACGACTCCTGCAGCAGAATTGGGGTTGAAGTCTATAATTTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

157

Amino Acids

17.7

Weight (kDa)

10.16

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	49 - 105	3e-10	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	1 cut(s)	166
AciI	CCGC	2 cut(s)	155, 166
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	2 cut(s)	51, 347
AluI	AGCT	2 cut(s)	51, 347
Alw21I	GWGCWC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	48, 89, 437
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	60, 101, 449
BciT130I	CCWGG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	46, 435
BisI	GCNGC	3 cut(s)	49, 90, 438
BlsI	GCNGC	3 cut(s)	50, 91, 439
Bme1390I	CCNGG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	401
BpmI	CTGGAG	2 cut(s)	105, 383
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 78, 108
Bse1I	ACTGG	2 cut(s)	64, 468
BseBI	CCWGG	1 cut(s)	401
BseNI	ACTGG	2 cut(s)	64, 468
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	60, 101, 449
Bsh1236I	CGCG	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	125, 212
BspACI	CCGC	2 cut(s)	155, 166
BspFNI	CGCG	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	50, 439
BsrI	ACTGG	2 cut(s)	64, 468
BssMI	GATC	2 cut(s)	125, 212
BssNAI	GTATAC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	205, 246
BstC8I	GCNNGC	2 cut(s)	164, 332
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	128, 215
BstMBI	GATC	2 cut(s)	125, 212
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 163
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	2 cut(s)	46, 435
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	60, 101, 449
BstZ17I	GTATAC	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	164, 332
CseI	GACGC	1 cut(s)	26
CviJI	RGCY	4 cut(s)	51, 83, 347, 404
CviKI_1	RGCY	4 cut(s)	51, 83, 347, 404
DpnI	GATC	2 cut(s)	127, 214
DpnII	GATC	2 cut(s)	125, 212
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	349
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	49, 90, 438
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	3 cut(s)	49, 90, 438
GluI	GCNGC	3 cut(s)	49, 90, 438
GsuI	CTGGAG	2 cut(s)	105, 383
HgaI	GACGC	1 cut(s)	26
HinfI	GANTC	6 cut(s)	42, 67, 121, 172, 192, 430
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	205, 246
HpyCH4V	TGCA	4 cut(s)	48, 162, 304, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 163
Kzo9I	GATC	2 cut(s)	125, 212
LmnI	GCTCC	2 cut(s)	86, 344
Lsp1109I	GCAGC	3 cut(s)	60, 101, 449
MaeIII	GTNAC	2 cut(s)	55, 207
MalI	GATC	2 cut(s)	127, 214
MboI	GATC	2 cut(s)	125, 212
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	4 cut(s)	357, 367, 443, 462
MlyI	GAGTC	3 cut(s)	51, 201, 424
MnlI	CCTC	3 cut(s)	73, 162, 228
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	3 cut(s)	323, 366, 411
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	89, 163
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	125, 212
NmuCI	GTSAC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	67, 121, 172
PkrI	GCNGC	3 cut(s)	50, 91, 439
Ple19I	CGATCG	1 cut(s)	215
PleI	GAGTC	3 cut(s)	50, 200, 424
PpsI	GAGTC	3 cut(s)	50, 200, 424
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PstI	CTGCAG	2 cut(s)	50, 439
PvuI	CGATCG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	323, 366, 411
SatI	GCNGC	3 cut(s)	49, 90, 438
Sau3AI	GATC	2 cut(s)	125, 212
SchI	GAGTC	3 cut(s)	51, 201, 424
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	2 cut(s)	53, 349
SfcI	CTRYAG	2 cut(s)	46, 435
Sse9I	AATT	4 cut(s)	357, 367, 443, 462
SsiI	CCGC	2 cut(s)	155, 166
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	205, 246
TaqI	TCGA	2 cut(s)	40, 124
TasI	AATT	4 cut(s)	357, 367, 443, 462
TfiI	GAWTC	3 cut(s)	67, 121, 172
Tru1I	TTAA	3 cut(s)	323, 366, 411
Tru9I	TTAA	3 cut(s)	323, 366, 411
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	48, 89, 437
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	239, 369
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 379
XmiI	GTMKAC	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.