Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

41692409 .. 41693577

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG323700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAACCAGAATATGCGCTGCGATTCGATCTTTTGAGAAACACCCATTGGGACTTTTGCCTTGCACGCGGAGGATTCAGTTGCCTGACACACGCGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGACAACAGTTTCATATGATAACCGAGAAACAACTTTTGGTCATAGACACAAAAGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGGTCAATATGAAATTATATTCAACTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGGTTAATAAAGAAACTGACACAACTCATGCACCAGAATTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

118

Amino Acids

13.8

Weight (kDa)

10.13

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	21 - 73	2.1e-09	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	2 cut(s)	70, 96
AciI	CCGC	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	310, 350
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	4 cut(s)	32, 64, 161, 193
ApeKI	GCWGC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 350
BseBI	CCWGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	310, 350
BseXI	GCAGC	1 cut(s)	7
Bsh1236I	CGCG	2 cut(s)	70, 96
Bsh1285I	CGRYCG	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	310, 350
BsmFI	GGGAC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	29, 116
BspACI	CCGC	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	70, 96
BssMI	GATC	2 cut(s)	29, 116
BssNAI	GTATAC	1 cut(s)	242
Bst1107I	GTATAC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	109, 150
BstC8I	GCNNGC	2 cut(s)	68, 236
BstFNI	CGCG	2 cut(s)	70, 96
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	32, 119
BstMBI	GATC	2 cut(s)	29, 116
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstUI	CGCG	2 cut(s)	70, 96
BstV1I	GCAGC	1 cut(s)	7
BstZ17I	GTATAC	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	68, 236
CfoI	GCGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	85
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	1 cut(s)	308
CviKI_1	RGCY	1 cut(s)	308
DpnI	GATC	2 cut(s)	31, 118
DpnII	GATC	2 cut(s)	29, 116
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	341
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	25, 76
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	109, 150
HpyCH4V	TGCA	3 cut(s)	66, 208, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	29, 116
LpnPI	CCDG	6 cut(s)	22, 99, 154, 248, 290, 317
Lsp1109I	GCAGC	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	31, 118
MboI	GATC	2 cut(s)	29, 116
MluCI	AATT	2 cut(s)	261, 347
MluI	ACGCGT	1 cut(s)	94
MnlI	CCTC	3 cut(s)	66, 132, 242
MseI	TTAA	2 cut(s)	227, 315
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	2 cut(s)	70, 96
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	2 cut(s)	29, 116
NlaIII	CATG	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	25, 76
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	22
Ple19I	CGATCG	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PvuI	CGATCG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	227, 315
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	29, 116
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	1 cut(s)	253
Sse9I	AATT	2 cut(s)	261, 347
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	109, 150
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	261, 347
TfiI	GAWTC	2 cut(s)	25, 76
Tru1I	TTAA	2 cut(s)	227, 315
Tru9I	TTAA	2 cut(s)	227, 315
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	143, 273
Van91I	CCANNNNNTGG	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 283
XmiI	GTMKAC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.