Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

45777658 .. 45785808

Gene Structure 8151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1374400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGGAGAAAGCCCAACCCACTTAGGTTACAGGCCTGGGCCATTTTATATTTGCTCACCCTCTCCATTTCCAGTTCTTTGGTTTCATTCTTTCTTCTGGTTTTGAAAAACAGAAAAGACCTAAACCCACTCAGGCACTCATTTGCACGACGGCTTCAAAGTCCGAACCTCACTCCTCAGCCCTCTCAGTGTGCAGGACTCTGCCAAAGAAAAAGACTAGCGAAAGTAATGGCCGCCAAGATATGCATAGCCATTCGATCATTTGGTCGCCCATTAACGGAGAACATCAACTGGGGGCTTCCACCTTACACACGGAAGATTGCATTGCCTGAATCACGAGTCTTATACACTGTGTTACGATCACCTCATGTTGATAAAAAGTCCAGAGAACAGTTTGAAATGAATGTCAAGAAACAGTTCCTGGTCATAAACACAGAAACACATGAATTGCAGAAGAAGTTCTTCTGGTTAAAACGCCAGCGGATATTTGGAGCCCAATATGAACTCCAGTTTTCTTGCAAGACCCGTTTGGATAAGGAAAAACTCCAGAAGTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

187

Amino Acids

21.91

Weight (kDa)

10.8

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	104 - 154	5.4e-10	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	234, 481
AcoI	YGGCCR	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	106, 158, 398
AjnI	CCWGG	2 cut(s)	35, 420
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	3 cut(s)	33, 39, 231
Asp700I	GAANNNNTTC	3 cut(s)	416, 458, 461
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	49, 354
BanII	GRGCYC	1 cut(s)	496
BauI	CACGAG	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	37, 422
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	37, 422
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	37, 422
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	491, 530
Bpu10I	CCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	72, 296, 508
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	37, 422
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	3 cut(s)	145, 191, 200
BseNI	ACTGG	3 cut(s)	72, 296, 508
BseRI	GAGGAG	2 cut(s)	19, 165
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	35, 41, 233
BslI	CCNNNNNNNGG	1 cut(s)	277
BsnI	GGCC	3 cut(s)	35, 41, 233
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	257, 359
BspACI	CCGC	2 cut(s)	234, 481
BspANI	GGCC	3 cut(s)	35, 41, 233
BspCNI	CTCAG	3 cut(s)	144, 190, 199
BspLI	GGNNCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	72, 296, 508
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	257, 359
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	37, 422
Bst4CI	ACNGT	3 cut(s)	352, 393, 417
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	4 cut(s)	23, 131, 177, 186
BstKTI	GATC	2 cut(s)	260, 362
BstMBI	GATC	2 cut(s)	257, 359
BstNI	CCWGG	2 cut(s)	37, 422
BstSCI	CCNGG	2 cut(s)	35, 420
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	35, 41, 233
BtsIMutI	CAGTG	2 cut(s)	194, 348
Cac8I	GCNNGC	1 cut(s)	479
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	39
CviAII	CATG	2 cut(s)	368, 443
CviJI	RGCY	9 cut(s)	13, 35, 41, 154, 181, 233, 251, 298, 494
CviKI_1	RGCY	9 cut(s)	13, 35, 41, 154, 181, 233, 251, 298, 494
DdeI	CTNAG	4 cut(s)	23, 131, 177, 186
DpnI	GATC	2 cut(s)	259, 361
DpnII	GATC	2 cut(s)	257, 359
EaeI	YGGCCR	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	35, 420
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	496
FaeI	CATG	2 cut(s)	371, 446
FaiI	YATR	8 cut(s)	49, 244, 248, 346, 369, 428, 444, 501
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	2 cut(s)	367, 442
Fnu4HI	GCNGC	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	491, 530
HaeIII	GGCC	3 cut(s)	35, 41, 233
Hin1II	CATG	2 cut(s)	371, 446
HinfI	GANTC	3 cut(s)	198, 332, 339
HphI	GGTGA	2 cut(s)	49, 354
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	4 cut(s)	336, 384, 409, 547
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	3 cut(s)	352, 393, 417
HpyCH4V	TGCA	6 cut(s)	146, 194, 246, 323, 451, 519
HpyF3I	CTNAG	4 cut(s)	23, 131, 177, 186
Hsp92II	CATG	2 cut(s)	371, 446
Kzo9I	GATC	2 cut(s)	257, 359
LmnI	GCTCC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	27, 354
MalI	GATC	2 cut(s)	259, 361
MboI	GATC	2 cut(s)	257, 359
MboII	GAAGA	4 cut(s)	86, 328, 454, 466
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	192, 348
MnlI	CCTC	5 cut(s)	71, 179, 186, 193, 375
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	3 cut(s)	416, 458, 461
MseI	TTAA	2 cut(s)	275, 470
MspA1I	CMGCKG	1 cut(s)	481
MspR9I	CCNGG	2 cut(s)	37, 422
MvaI	CCWGG	2 cut(s)	37, 422
NdeII	GATC	2 cut(s)	257, 359
NlaIII	CATG	2 cut(s)	371, 446
NlaIV	GGNNCC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	35
PdmI	GAANNNNTTC	3 cut(s)	416, 458, 461
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	2 cut(s)	192, 347
PpsI	GAGTC	2 cut(s)	192, 347
Psp6I	CCWGG	2 cut(s)	35, 420
PspGI	CCWGG	2 cut(s)	35, 420
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	275, 470
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	257, 359
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	192, 348
ScrFI	CCNGG	2 cut(s)	37, 422
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	5 cut(s)	29, 123, 171, 307, 367
Sse9I	AATT	1 cut(s)	446
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	234, 481
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	35, 420
TaaI	ACNGT	3 cut(s)	352, 393, 417
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	446
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	275, 470
Tru9I	TTAA	2 cut(s)	275, 470
TscAI	CASTG	2 cut(s)	194, 355
TspDTI	ATGAA	4 cut(s)	75, 416, 459, 516
TspGWI	ACGGA	2 cut(s)	293, 328
TspRI	CASTG	2 cut(s)	194, 355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmnI	GAANNNNTTC	3 cut(s)	416, 458, 461
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.