Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

5353913 .. 5355245

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG040500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATAACCAAGAAACAACTTCTCGTCATAGACACGAAGGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTTAATTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGCTTAATAAGGAAACTGAAACGACTCCTGCAGCAGAATTGGGGTTGAAGTCTATAATTTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

73

Amino Acids

8.39

Weight (kDa)

10.0

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	216
BssNAI	GTATAC	1 cut(s)	86
Bst1107I	GTATAC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	197
BstZ17I	GTATAC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	80
CviJI	RGCY	2 cut(s)	95, 152
CviKI_1	RGCY	2 cut(s)	95, 152
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	97
FaiI	YATR	5 cut(s)	29, 86, 102, 110, 209
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	52, 185
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	92, 134, 161, 195
Lsp1109I	GCAGC	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	105, 115, 191, 210
MlyI	GAGTC	1 cut(s)	172
MseI	TTAA	3 cut(s)	71, 114, 159
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	71, 114, 159
SatI	GCNGC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	105, 115, 191, 210
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	147
TasI	AATT	4 cut(s)	105, 115, 191, 210
Tru1I	TTAA	3 cut(s)	71, 114, 159
Tru9I	TTAA	3 cut(s)	71, 114, 159
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 127
XmiI	GTMKAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.