Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007977.1

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

4272 .. 7211

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgcacatcctgcagcaaagcgcgggcaccgctgctagtataccactctctacttttccgccctccaccgccgaccgccgcggtttcatcgcaaaacgggcccctcgaatcgccgatatctccactatagtcattgaggctggagcagcagtaatgacaaccagaatatgcgttgcgattcgatcttttgcgaaacacccattgggacttccgccttgcacgcggaggattcggttgcctgacacacgagtcttatatactgtgttacgatcgcctcatattgataagaagtccagagaacagtttcatatgataaccaagaaacaacttctggtcatagacacgaaggcaaatgagttgcaaaagaagttcttttggttaaaacgccagcgtatacttggagctcaatacgaaattatatttaattccaagacccgtttggataagggaaaactccaggctttacttaataaggaaactgaaacgactcctgcagcagaattggggttgaagtccataatttccagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

176

Amino Acids

19.75

Weight (kDa)

10.59

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	40, 394
AccII	CGCG	3 cut(s)	23, 81, 223
AciI	CCGC	9 cut(s)	23, 30, 59, 69, 76, 79, 81, 212, 223
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Alw21I	GWGCWC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	99
ApaI	GGGCCC	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	13, 32, 146, 494
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	99, 100
BaeGI	GKGCMC	2 cut(s)	29, 103
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	103, 406
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	4 cut(s)	19, 25, 158, 506
BciT130I	CCWGG	1 cut(s)	458
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	3 cut(s)	11, 126, 492
BisI	GCNGC	5 cut(s)	14, 33, 79, 147, 495
BlsI	GCNGC	5 cut(s)	15, 34, 80, 148, 496
Bme1390I	CCNGG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	99, 100
BmiI	GGNNCC	3 cut(s)	28, 101, 102
BmrFI	CCNGG	1 cut(s)	458
BpmI	CTGGAG	2 cut(s)	162, 440
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	525
BseSI	GKGCMC	2 cut(s)	29, 103
BseXI	GCAGC	4 cut(s)	19, 25, 158, 506
Bsh1236I	CGCG	3 cut(s)	23, 81, 223
Bsh1285I	CGRYCG	2 cut(s)	76, 272
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	2 cut(s)	76, 272
BsiHKAI	GWGCWC	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	101
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	29, 103, 406
Bsp143I	GATC	2 cut(s)	182, 269
BspACI	CCGC	9 cut(s)	23, 30, 59, 69, 76, 79, 81, 212, 223
BspANI	GGCC	1 cut(s)	101
BspFNI	CGCG	3 cut(s)	23, 81, 223
BspLI	GGNNCC	3 cut(s)	28, 101, 102
BspMAI	CTGCAG	2 cut(s)	15, 496
BspT107I	GGYRCC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	2 cut(s)	182, 269
BssNAI	GTATAC	2 cut(s)	41, 395
BssSI	CACGAG	1 cut(s)	246
Bst1107I	GTATAC	2 cut(s)	41, 395
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	262, 303
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	25, 221, 389
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	6
BstFNI	CGCG	3 cut(s)	23, 81, 223
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	185, 272
BstMBI	GATC	2 cut(s)	182, 269
BstMCI	CGRYCG	2 cut(s)	76, 272
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 29, 98, 146, 220
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	3 cut(s)	11, 126, 492
BstSLI	GKGCMC	2 cut(s)	29, 103
BstUI	CGCG	3 cut(s)	23, 81, 223
BstV1I	GCAGC	4 cut(s)	19, 25, 158, 506
BstZ17I	GTATAC	2 cut(s)	41, 395
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	6
Cac8I	GCNNGC	3 cut(s)	25, 221, 389
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	99, 100
Cfr42I	CCGCGG	1 cut(s)	82
CviJI	RGCY	4 cut(s)	101, 140, 404, 461
CviKI_1	RGCY	4 cut(s)	101, 140, 404, 461
DpnI	GATC	2 cut(s)	184, 271
DpnII	GATC	2 cut(s)	182, 269
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	2 cut(s)	48, 201
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	103, 406
Eco32I	GATATC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	103, 406
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	219
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	309
FblI	GTMKAC	2 cut(s)	40, 394
Fnu4HI	GCNGC	5 cut(s)	14, 33, 79, 147, 495
FriOI	GRGCYC	2 cut(s)	103, 406
Fsp4HI	GCNGC	5 cut(s)	14, 33, 79, 147, 495
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	5 cut(s)	14, 33, 79, 147, 495
GsuI	CTGGAG	2 cut(s)	162, 440
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	5 cut(s)	108, 178, 229, 249, 487
Hpy166II	GTNNAC	2 cut(s)	41, 395
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	2 cut(s)	41, 395
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	262, 303
HpyCH4V	TGCA	5 cut(s)	4, 13, 219, 361, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 29, 98, 146, 220
HspAI	GCGC	1 cut(s)	21
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	182, 269
LmnI	GCTCC	2 cut(s)	143, 401
Lsp1109I	GCAGC	4 cut(s)	19, 25, 158, 506
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	184, 271
MboI	GATC	2 cut(s)	182, 269
MhlI	GDGCHC	3 cut(s)	29, 103, 406
MluCI	AATT	4 cut(s)	414, 424, 500, 519
MlyI	GAGTC	2 cut(s)	258, 481
MnlI	CCTC	5 cut(s)	73, 114, 130, 219, 285
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	380, 423, 468
MspA1I	CMGCKG	2 cut(s)	32, 81
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	3 cut(s)	23, 81, 223
MwoI	GCNNNNNNNGC	5 cut(s)	10, 29, 98, 146, 220
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	2 cut(s)	182, 269
NlaIV	GGNNCC	3 cut(s)	28, 101, 102
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	108, 178, 229
PkrI	GCNGC	5 cut(s)	15, 34, 80, 148, 496
Ple19I	CGATCG	1 cut(s)	272
PleI	GAGTC	2 cut(s)	257, 481
PpsI	GAGTC	2 cut(s)	257, 481
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	28, 101, 102
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	99, 100
PstI	CTGCAG	2 cut(s)	15, 496
PvuI	CGATCG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	406
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	380, 423, 468
SatI	GCNGC	5 cut(s)	14, 33, 79, 147, 495
Sau3AI	GATC	2 cut(s)	182, 269
Sau96I	GGNCC	2 cut(s)	99, 100
SchI	GAGTC	2 cut(s)	258, 481
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	29, 103, 406
SetI	ASST	1 cut(s)	406
SfcI	CTRYAG	3 cut(s)	11, 126, 492
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse9I	AATT	4 cut(s)	414, 424, 500, 519
SsiI	CCGC	9 cut(s)	23, 30, 59, 69, 76, 79, 81, 212, 223
SspMI	CTAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	262, 303
TaqI	TCGA	2 cut(s)	106, 181
TasI	AATT	4 cut(s)	414, 424, 500, 519
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	108, 178, 229
Tru1I	TTAA	3 cut(s)	380, 423, 468
Tru9I	TTAA	3 cut(s)	380, 423, 468
TseI	GCWGC	4 cut(s)	13, 32, 146, 494
TspDTI	ATGAA	2 cut(s)	76, 296
XcmI	CCANNNNNNNNNTGG	2 cut(s)	395, 436
XmiI	GTMKAC	2 cut(s)	40, 394
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.