Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

5442417 .. 5442986

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G029400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGCATCGGAGAGGCTTCAACCGGTGCCCTAGGCCTTACCGAGCGTTCTTATTTGTGGAGATCAGCCGCTCCAATGAGGCCCAGGACATTCCGAAGGCAAATACATCACTAAGTTGGGCCCAAAAGTGTCGAACCATTTTTGAGCATCAACAAGTCTTATATACTGTGTTGCGATCACCTCATATTGATAAAAAGTCCAGAGAGCAGTTTGAAATGGAAATCAAGAAACAATATCTGGTCATAAAGACACAACCGCATGAATTGCAGAAGAAGTGTTTTTGGCTAAAGCGCCAACGTATATTTGGAGCTCAATATGAACTCCTATTTTCTTGCAAGACTCGCTTGGATAAGGAACAACTGCAGAAATCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

126

Amino Acids

15.2

Weight (kDa)

9.88

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	2 cut(s)	70, 257
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	22, 215
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	313
AoxI	GGCC	3 cut(s)	35, 81, 120
ApaI	GGGCCC	1 cut(s)	124
AsiGI	ACCGGT	1 cut(s)	24
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	82, 120, 121
AsuHPI	GGTGA	1 cut(s)	171
AvrII	CCTAGG	1 cut(s)	32
BaeGI	GKGCMC	2 cut(s)	32, 124
BanI	GGYRCC	1 cut(s)	27
BanII	GRGCYC	2 cut(s)	124, 313
Bbv12I	GWGCWC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	70
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	82, 120, 121
BmiI	GGNNCC	2 cut(s)	29, 122
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	16, 157
BsaJI	CCNNGG	2 cut(s)	32, 84
BsaWI	WCCGGW	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	32, 84
BseSI	GKGCMC	2 cut(s)	32, 124
BshFI	GGCC	3 cut(s)	37, 83, 122
BshNI	GGYRCC	1 cut(s)	27
BshTI	ACCGGT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	25
BsnI	GGCC	3 cut(s)	37, 83, 122
Bsp120I	GGGCCC	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	32, 124, 313
Bsp143I	GATC	2 cut(s)	63, 176
BspACI	CCGC	2 cut(s)	70, 257
BspANI	GGCC	3 cut(s)	37, 83, 122
BspLI	GGNNCC	2 cut(s)	29, 122
BspMAI	CTGCAG	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	32, 84
BssMI	GATC	2 cut(s)	63, 176
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	66, 179
BstMBI	GATC	2 cut(s)	63, 176
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 342, 370
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	32, 124
BsuRI	GGCC	3 cut(s)	37, 83, 122
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	82, 120, 121
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	18, 37, 69, 83, 122, 286, 311
CviKI_1	RGCY	7 cut(s)	18, 37, 69, 83, 122, 286, 311
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	65, 178
DpnII	GATC	2 cut(s)	63, 176
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	124, 313
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	124, 313
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	163, 165, 186, 245, 261, 302, 318
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	70
FriOI	GRGCYC	2 cut(s)	124, 313
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	37, 83, 122
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	12, 96
Hpy188III	TCNNGA	2 cut(s)	201, 226
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	268, 336, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 342, 370
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	63, 176
LmnI	GCTCC	3 cut(s)	4, 77, 308
LpnPI	CCDG	5 cut(s)	38, 71, 98, 214, 224
LweI	GCATC	2 cut(s)	16, 157
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	298
MalI	GATC	2 cut(s)	65, 178
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	63, 176
MboII	GAAGA	1 cut(s)	283
MhlI	GDGCHC	3 cut(s)	32, 124, 313
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	8, 73, 192
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	265, 342, 370
NdeII	GATC	2 cut(s)	63, 176
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	29, 122
PceI	AGGCCT	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	29, 122
PspOMI	GGGCCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	82, 120, 121
PstI	CTGCAG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	63, 176
Sau96I	GGNCC	3 cut(s)	82, 120, 121
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	3 cut(s)	32, 124, 313
SetI	ASST	3 cut(s)	184, 301, 313
SfaNI	GCATC	2 cut(s)	16, 157
SfcI	CTRYAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	263
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	70, 257
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	276, 333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	32
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.