Rh1CG045700

ribosomal protein s10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003882
Physical Location & Seq
Forward (+)
8679561 .. 8682471
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG045700.1

Sequence Viewer

Length: 357 bp
ATGACAACCAGAATATGCGTTGCGATTCGATCTTTTGCGAAACACCCATTGGGACTTCCGCCTTGCACGCGGAGGATTCGGTTGCCTGACACACGAGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGAGAACAGTTTCATATGATAACCAAGAAACAACTTCTCGTCATAGACACGAAGGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTTAATTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGCTTAATAAGGAAACTGAAACGACTCCTGCAGCAGAATTGGGGTAA

Protein Analysis

118

Amino Acids

13.76

Weight (kDa)

10.41

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 17 - 73 1.7e-10 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 241
AccII CGCG 1 cut(s) 70
AciI CCGC 2 cut(s) 59, 70
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 253
BauI CACGAG 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 29, 116
BspACI CCGC 2 cut(s) 59, 70
BspFNI CGCG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 343
BssMI GATC 2 cut(s) 29, 116
BssNAI GTATAC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 109, 150
BstC8I GCNNGC 2 cut(s) 68, 236
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 2 cut(s) 32, 119
BstMBI GATC 2 cut(s) 29, 116
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 353
BstZ17I GTATAC 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 68, 236
CviJI RGCY 2 cut(s) 251, 308
CviKI_1 RGCY 2 cut(s) 251, 308
DpnI GATC 2 cut(s) 31, 118
DpnII GATC 2 cut(s) 29, 116
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 253
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 287
HinfI GANTC 4 cut(s) 25, 76, 96, 334
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 109, 150
HpyCH4V TGCA 3 cut(s) 66, 208, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 29, 116
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 22, 99, 154, 248, 290, 317, 351
Lsp1109I GCAGC 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 111
MalI GATC 2 cut(s) 31, 118
MboI GATC 2 cut(s) 29, 116
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 3 cut(s) 261, 271, 347
MlyI GAGTC 2 cut(s) 105, 328
MnlI CCTC 2 cut(s) 66, 132
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 227, 270, 315
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeI CATATG 1 cut(s) 156
NdeII GATC 2 cut(s) 29, 116
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 25, 76
PkrI GCNGC 1 cut(s) 343
Ple19I CGATCG 1 cut(s) 119
PleI GAGTC 2 cut(s) 104, 328
PpsI GAGTC 2 cut(s) 104, 328
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PstI CTGCAG 1 cut(s) 343
PvuI CGATCG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 227, 270, 315
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 29, 116
SchI GAGTC 2 cut(s) 105, 328
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 253
SetI ASST 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 3 cut(s) 261, 271, 347
SsiI CCGC 2 cut(s) 59, 70
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 109, 150
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 261, 271, 347
TfiI GAWTC 2 cut(s) 25, 76
Tru1I TTAA 3 cut(s) 227, 270, 315
Tru9I TTAA 3 cut(s) 227, 270, 315
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 143, 273
XcmI CCANNNNNNNNNTGG 2 cut(s) 242, 283
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.