Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

71769654 .. 71772917

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG497400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAACCAGAATATGTGTTGCGATTCGATCTTTTGAGAAATATCCATTGGGACTTCTGCCTTGCACGCGGAGGATTCAGTTGCCTGACACACGCGTCTTATATACCGTGTTACGATCACCTCATATTGATAAGAAGTCCAGAGAACAATTTCATATGATAACCAAGAAACTACTTCTGGTCATAGACGCAAAAGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTCAACTCAAAGACCCGTTTGGATAAGGGAAAACTGCAGACTTTGGTTAATAAGGAAACTGACACAACTCGTGCAGCAGAATTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

118

Amino Acids

13.85

Weight (kDa)

10.21

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	21 - 71	1.7e-09	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	2 cut(s)	70, 96
AciI	CCGC	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	70, 96
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	29, 116
BspACI	CCGC	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	70, 96
BspMAI	CTGCAG	1 cut(s)	306
BssMI	GATC	2 cut(s)	29, 116
BssNAI	GTATAC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	336
Bst1107I	GTATAC	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	68, 236
BstFNI	CGCG	2 cut(s)	70, 96
BstKTI	GATC	2 cut(s)	32, 119
BstMBI	GATC	2 cut(s)	29, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	2 cut(s)	70, 96
BstV1I	GCAGC	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	68, 236
CseI	GACGC	2 cut(s)	85, 197
CviJI	RGCY	1 cut(s)	251
CviKI_1	RGCY	1 cut(s)	251
DpnI	GATC	2 cut(s)	31, 118
DpnII	GATC	2 cut(s)	29, 116
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	253
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
HgaI	GACGC	2 cut(s)	85, 197
HinfI	GANTC	2 cut(s)	25, 76
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	66, 208, 304, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	29, 116
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	5 cut(s)	22, 99, 154, 164, 248
Lsp1109I	GCAGC	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	31, 118
MboI	GATC	2 cut(s)	29, 116
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	149, 261, 347
MluI	ACGCGT	1 cut(s)	94
MnlI	CCTC	2 cut(s)	66, 132
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	227, 315
MvnI	CGCG	2 cut(s)	70, 96
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	2 cut(s)	29, 116
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	25, 76
PkrI	GCNGC	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	227, 315
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	29, 116
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	2 cut(s)	124, 253
SfcI	CTRYAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	149, 261, 347
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	149, 261, 347
TfiI	GAWTC	2 cut(s)	25, 76
Tru1I	TTAA	2 cut(s)	227, 315
Tru9I	TTAA	2 cut(s)	227, 315
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	143, 273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.