Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

53125930 .. 53126663

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCAGGGATTTTCAACCAATTCCTGGTTCCACTGCTTGCTGGTTTTGCTCTTATGCTCTTAGTTCATGCGCAGGATCAAACAGGCTTCATCAGCATAGATTGCGGCCTTGCGGAGAATTCCACCTATTCTGAAAAGAAAACAACCATCGACTACATTTCAGATGCAACCTTCATAGACACTGGTGAAAGAAAGTTGGTATTGCCTGAAAACAGAAACGGCTACCAACAGCCTTACTGGTCTCTTAGGAGCTTTCCTCAAGGAACCAGGAACTGCTACAAAATAAATGTTAAAAGTGGCACCAGATACTTGATCAGAGCCAGTTTCTTTTATGGGAACTATGATGGAGAAAACAAATTGCCAGAGTTTGAACTACATCTTGGATCTAATTTGTGGGACATGGTCAGTCTGGAAGATGCATCCAGTTCCACAAGCAAGGAGCTCATACATTATGTCCCAGCTAAGAGAAGCTATCTACATGTTTGTGTTGTGGATACAGGCTCCGGGGTTCCATTTATATCAACAATAGAACTGAGACCTTTGCCGTATACAACTTATCAAACACAAACAGGGTCCTTGTCACTTTACACAAGACTTGACACTGGTCAAATAGCACCTAATCTAACTGCATATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

212

Amino Acids

23.89

Weight (kDa)

6.07

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	33 - 203	5.5e-64	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	2 cut(s)	105, 113
AclWI	GGATC	2 cut(s)	84, 391
AcsI	RAATTY	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	2 cut(s)	16, 371
AjnI	CCWGG	2 cut(s)	24, 266
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 363, 395
AluBI	AGCT	4 cut(s)	252, 442, 461, 471
AluI	AGCT	4 cut(s)	252, 442, 461, 471
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	246, 529
AlwI	GGATC	2 cut(s)	84, 391
AlwNI	CAGNNNCTG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	444
BccI	CCATC	2 cut(s)	155, 338
BceAI	ACGGC	2 cut(s)	235, 529
BciT130I	CCWGG	2 cut(s)	26, 268
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	246, 529
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	26, 268, 505
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	6 cut(s)	30, 265, 301, 502, 510, 574
BmrFI	CCNGG	3 cut(s)	26, 268, 505
BmsI	GCATC	3 cut(s)	154, 406, 428
BoxI	GACNNNNGTC	1 cut(s)	603
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	505
BsaI	GGTCTC	2 cut(s)	246, 529
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	5 cut(s)	187, 242, 321, 423, 607
BseBI	CCWGG	2 cut(s)	26, 268
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	5 cut(s)	187, 242, 321, 423, 607
BseYI	CCCAGC	1 cut(s)	457
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	410, 440
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	246, 529
BsmFI	GGGAC	2 cut(s)	410, 440
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	2 cut(s)	246, 529
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	76, 312, 383
BspACI	CCGC	2 cut(s)	105, 113
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	6 cut(s)	30, 265, 301, 502, 510, 574
BspPI	GGATC	2 cut(s)	84, 391
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	2 cut(s)	246, 529
BsrI	ACTGG	5 cut(s)	187, 242, 321, 423, 607
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	76, 312, 383
BssNAI	GTATAC	1 cut(s)	549
Bst1107I	GTATAC	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	26, 268
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	61, 245, 462, 533
BstF5I	GGATG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	79, 315, 386
BstMAI	GTCTC	2 cut(s)	246, 529
BstMBI	GATC	3 cut(s)	76, 312, 383
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 93, 102
BstNI	CCWGG	2 cut(s)	26, 268
BstNSI	RCATGY	1 cut(s)	482
BstPAI	GACNNNNGTC	1 cut(s)	603
BstSCI	CCNGG	3 cut(s)	24, 266, 503
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BstZ17I	GTATAC	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 180, 600
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	573
CviAII	CATG	3 cut(s)	68, 400, 479
DdeI	CTNAG	4 cut(s)	61, 245, 462, 533
DpnI	GATC	3 cut(s)	78, 314, 385
DpnII	GATC	3 cut(s)	76, 312, 383
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	2 cut(s)	246, 529
Eco47I	GGWCC	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	24, 266
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	3 cut(s)	71, 403, 482
FaqI	GGGAC	2 cut(s)	410, 440
FatI	CATG	3 cut(s)	67, 399, 478
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	106
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	71, 403, 482
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	3 cut(s)	133, 163, 317
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	167, 419, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 93, 102
HpyF3I	CTNAG	4 cut(s)	61, 245, 462, 533
Hsp92II	CATG	3 cut(s)	71, 403, 482
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	76, 312, 383
LmnI	GCTCC	3 cut(s)	249, 439, 506
LweI	GCATC	3 cut(s)	154, 406, 428
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	3 cut(s)	78, 314, 385
MboI	GATC	3 cut(s)	76, 312, 383
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	4 cut(s)	20, 118, 356, 388
MnlI	CCTC	1 cut(s)	267
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	26, 268, 505
MvaI	CCWGG	2 cut(s)	26, 268
MwoI	GCNNNNNNNGC	3 cut(s)	47, 93, 102
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	76, 312, 383
NlaIII	CATG	3 cut(s)	71, 403, 482
NlaIV	GGNNCC	6 cut(s)	30, 265, 301, 502, 510, 574
NmuCI	GTSAC	1 cut(s)	579
NsbI	TGCGCA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	482
PciI	ACATGT	1 cut(s)	478
PflFI	GACNNNGTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	573
PscI	ACATGT	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	24, 266
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	24, 266
PspN4I	GGNNCC	6 cut(s)	30, 265, 301, 502, 510, 574
PspPI	GGNCC	1 cut(s)	573
PspPPI	RGGWCCY	1 cut(s)	573
PstNI	CAGNNNCTG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	383
PsyI	GACNNNGTC	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	76, 312, 383
Sau96I	GGNCC	1 cut(s)	573
ScrFI	CCNGG	3 cut(s)	26, 268, 505
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	9 cut(s)	128, 173, 254, 444, 463, 473, 541, 619, 638
SfaNI	GCATC	3 cut(s)	154, 406, 428
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	20, 118, 356, 388
SsiI	CCGC	2 cut(s)	105, 113
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	24, 266, 503
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	20, 118, 356, 388
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	3 cut(s)	39, 187, 607
TseFI	GTSAC	1 cut(s)	579
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	3 cut(s)	56, 79, 163
TspRI	CASTG	3 cut(s)	39, 187, 607
Tth111I	GACNNNGTC	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.