Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

4975314 .. 4977054

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1044600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCCGCCAAGATATGCATAGCCATTCGATCATTTGGTCGCCCATTGACGGAAAACATCAACTGGGGACTTCCACCTTACACAAGGAAGATTGCACTGCCGGAATCAAGAGTCTTGTACACTGTGTTACGATCACCTCATGTTGATAAAAAGTCCAGAGAACAGTTTGAAATGAATGTCAAGAAACAGTTTCTGGTCATAAACACAGAAACACATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAGCGCCAGCGCATATTTGGAGCCCAATACGAACTCCGATTTTCTTGCAAGACACGTTTGGACAAGGAAAAACTCCAGAGATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

111

Amino Acids

13.21

Weight (kDa)

10.29

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	28 - 79	1.5e-10	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	2 cut(s)	249, 255
AsuHPI	GGTGA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	29, 131
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	29, 131
Bst4CI	ACNGT	3 cut(s)	124, 165, 189
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 255
BstKTI	GATC	2 cut(s)	32, 134
BstMBI	GATC	2 cut(s)	29, 131
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 120
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	2 cut(s)	249, 255
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	140, 215
CviJI	RGCY	3 cut(s)	5, 23, 266
CviKI_1	RGCY	3 cut(s)	5, 23, 266
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	2 cut(s)	31, 133
DpnII	GATC	2 cut(s)	29, 131
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	2 cut(s)	143, 218
FaiI	YATR	6 cut(s)	16, 20, 141, 200, 216, 257
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	2 cut(s)	139, 214
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	2 cut(s)	248, 254
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	2 cut(s)	249, 255
Hin1II	CATG	2 cut(s)	143, 218
Hin6I	GCGC	2 cut(s)	247, 253
HinP1I	GCGC	2 cut(s)	247, 253
HinfI	GANTC	2 cut(s)	104, 111
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	4 cut(s)	108, 156, 181, 319
Hpy8I	GTNNAC	1 cut(s)	120
HpyCH4III	ACNGT	3 cut(s)	124, 165, 189
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	18, 95, 223, 291
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	143, 218
HspAI	GCGC	2 cut(s)	247, 253
Kzo9I	GATC	2 cut(s)	29, 131
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	5 cut(s)	49, 114, 169, 179, 263
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	2 cut(s)	31, 133
MboI	GATC	2 cut(s)	29, 131
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	20
MseI	TTAA	1 cut(s)	242
MspI	CCGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	29, 131
NlaIII	CATG	2 cut(s)	143, 218
NlaIV	GGNNCC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	29, 131
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	79, 139, 301
SsiI	CCGC	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	124, 165, 189
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	102, 127
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	102, 127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.