Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

5341787 .. 5342641

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCACAAAGACAATATGACTCTAAAGTACTTGGAGATAGACAACTGTTCCTTTCTCATGTCCTTTCCAAATGGTGAGTTACCAACAAGCCTTGAGCGTCTTGAGATTAGTGATTGCTCTAATTTCCAGACATTGCCATTGAGCCTTCTCAATCTCACGAATCTTGAGACCTTGGAAGTAAAGAGCTGCCCCCTTCTTCAGGACTTTCCAGAGGGTGGATTGCCACCCAACATAAAGTTTGTCACAATTTCCGAATGTGAGAATCTCAAGTCTCTACCTAAATTCTTTCATAAACTCAAATGTCTTCAGAAGTTGGAGATTTCTGGCTGTCCTAGTCTCCTGTCCTTGCCAAAGCAGGGTCTGCCCAGCAGCTTAAGACTACTTACAGTTACTGATTGTGAAAAGCTTAATCCCATACATCAGTGGAGACTTCACAAACTACCCTCTCTAGATGTTTTCACCATTGGTGGATTTCCTGGCCTGAAGTCCTTTTCAAAAGATTATCCTCTTCCTCACAGTTTAACCTCTTTAAGCATTCAAAGATTCCCAGATCTTGAATCCATATCGGAGGTGCTTGAGAATCTCACCACACTTGAAAACCTGAGTATCAGGGAGTGTGATAAGCTCCAATCTTTGCCAGAGACGGGGCTACCAGCGACAATTTCTACCTTGACAATTCGGAATTGTTTACTTCTAGAACCTCGATGTGAAAAGGACAAAGGAGAAGATTGGTCCAAGATCAAAAACATCCCCTTCGTGAGTTCACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

5.8

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	3 cut(s)	182, 290, 503
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	199, 215, 356, 644
AflII	CTTAAG	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	495, 539, 557, 596
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	4 cut(s)	186, 372, 406, 625
AluI	AGCT	4 cut(s)	186, 372, 406, 625
Alw26I	GTCTC	5 cut(s)	161, 276, 341, 421, 635
AlwNI	CAGNNNCTG	2 cut(s)	361, 392
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	186, 369
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	3 cut(s)	86, 451, 577
AvaII	GGWCC	1 cut(s)	732
BaeI	ACNNNNGTAYC	2 cut(s)	589, 622
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	173, 381
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	5 cut(s)	161, 276, 341, 421, 635
BfaI	CTAG	3 cut(s)	333, 449, 695
BfrI	CTTAAG	1 cut(s)	373
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	187, 370
BlsI	GCNGC	2 cut(s)	188, 371
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	296
BpuEI	CTTGAG	5 cut(s)	113, 122, 185, 251, 596
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 215, 356, 644
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	747
BseLI	CCNNNNNNNGG	4 cut(s)	199, 215, 356, 644
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	173, 381
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	480
BslI	CCNNNNNNNGG	4 cut(s)	199, 215, 356, 644
BsmAI	GTCTC	5 cut(s)	161, 276, 341, 421, 635
BsmBI	CGTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	480
Bso31I	GGTCTC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	550, 738
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	550, 738
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	47, 388, 518
Bst6I	CTCTTC	1 cut(s)	513
BstAFI	CTTAAG	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	747
BstKTI	GATC	2 cut(s)	553, 741
BstMAI	GTCTC	5 cut(s)	161, 276, 341, 421, 635
BstMBI	GATC	2 cut(s)	550, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	173, 381
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	428
CaiI	CAGNNNCTG	2 cut(s)	361, 392
Cfr13I	GGNCC	1 cut(s)	732
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	90, 144, 186, 327, 372, 406, 480, 625, 649
CviKI_1	RGCY	9 cut(s)	90, 144, 186, 327, 372, 406, 480, 625, 649
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	2 cut(s)	552, 740
DpnII	GATC	2 cut(s)	550, 738
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	732
Eco57I	CTGAAG	3 cut(s)	182, 290, 503
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	1 cut(s)	61
FaiI	YATR	6 cut(s)	17, 59, 233, 291, 416, 563
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	187, 370
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	2 cut(s)	187, 370
FspBI	CTAG	3 cut(s)	333, 449, 695
GluI	GCNGC	2 cut(s)	187, 370
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	480
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	6 cut(s)	19, 160, 262, 543, 557, 580
HphI	GGTGA	3 cut(s)	86, 451, 577
Hpy166II	GTNNAC	2 cut(s)	689, 764
Hpy188I	TCNGA	4 cut(s)	253, 309, 568, 681
Hpy8I	GTNNAC	2 cut(s)	689, 764
HpyAV	CCTTC	3 cut(s)	155, 203, 763
HpyCH4III	ACNGT	3 cut(s)	47, 388, 518
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	602
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	550, 738
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	2 cut(s)	173, 381
MaeI	CTAG	3 cut(s)	333, 449, 695
MaeIII	GTNAC	3 cut(s)	78, 241, 388
MalI	GATC	2 cut(s)	552, 740
MboI	GATC	2 cut(s)	550, 738
MboII	GAAGA	4 cut(s)	188, 296, 500, 737
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	6 cut(s)	121, 246, 281, 660, 675, 682
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	7 cut(s)	205, 454, 516, 522, 535, 562, 711
MseI	TTAA	4 cut(s)	374, 408, 521, 530
MspCI	CTTAAG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeII	GATC	2 cut(s)	550, 738
NlaIII	CATG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	5 cut(s)	160, 262, 543, 557, 580
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	188, 371
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	732
PstNI	CAGNNNCTG	2 cut(s)	361, 392
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	4 cut(s)	374, 408, 521, 530
SatI	GCNGC	2 cut(s)	187, 370
Sau3AI	GATC	2 cut(s)	550, 738
Sau96I	GGNCC	1 cut(s)	732
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	732
SmlI	CTYRAG	6 cut(s)	92, 101, 164, 266, 373, 575
SmoI	CTYRAG	6 cut(s)	92, 101, 164, 266, 373, 575
Sse9I	AATT	6 cut(s)	121, 246, 281, 660, 675, 682
SspMI	CTAG	3 cut(s)	333, 449, 695
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	47, 388, 518
TaqI	TCGA	1 cut(s)	703
TasI	AATT	6 cut(s)	121, 246, 281, 660, 675, 682
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	5 cut(s)	160, 262, 543, 557, 580
Tru1I	TTAA	4 cut(s)	374, 408, 521, 530
Tru9I	TTAA	4 cut(s)	374, 408, 521, 530
TscAI	CASTG	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	186, 369
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	732
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	281
XbaI	TCTAGA	2 cut(s)	448, 694
XspI	CTAG	3 cut(s)	333, 449, 695
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.