Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

8138162 .. 8141983

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG050500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGCACCGATCGCTGTAAGAGCCTCTGTCATTGAGGCTGGAGCAGCAGTAATGACAACCAGAATATGCGTTGCGATTCGATCTTTTGCGAAACACCCATTGGGACTTCCGCCTTGCACGCGGAGGATTCGGTTGCCTGACACACGAGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGAGAACAGTTTCATATGATAACCAAGAAACAACTTCTCGTCATAGACACGAAGGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTTAATTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGCTTAATAAGGAAACTGAAACGACTCCTGCAGCAGAATTGGGGTTGAAGTCTATAATTTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

143

Amino Acids

16.17

Weight (kDa)

10.44

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	35 - 91	2.8e-10	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	295
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	5, 113, 124
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	47, 395
Asp700I	GAANNNNTTC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	59, 407
BciT130I	CCWGG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	3 cut(s)	6, 48, 396
BlsI	GCNGC	3 cut(s)	7, 49, 397
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	63, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	59, 407
Bsh1236I	CGCG	1 cut(s)	124
Bsh1285I	CGRYCG	2 cut(s)	15, 173
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	2 cut(s)	15, 173
BsiHKAI	GWGCWC	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	12, 83, 170
BspACI	CCGC	3 cut(s)	5, 113, 124
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	12, 83, 170
BssNAI	GTATAC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	163, 204
BstC8I	GCNNGC	2 cut(s)	122, 290
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	15, 86, 173
BstMBI	GATC	3 cut(s)	12, 83, 170
BstMCI	CGRYCG	2 cut(s)	15, 173
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 23, 47, 121
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	59, 407
BstZ17I	GTATAC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	122, 290
CviJI	RGCY	4 cut(s)	26, 41, 305, 362
CviKI_1	RGCY	4 cut(s)	26, 41, 305, 362
DpnI	GATC	3 cut(s)	14, 85, 172
DpnII	GATC	3 cut(s)	12, 83, 170
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	307
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	6, 48, 396
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	6, 48, 396
GluI	GCNGC	3 cut(s)	6, 48, 396
GsuI	CTGGAG	2 cut(s)	63, 341
HinfI	GANTC	4 cut(s)	79, 130, 150, 388
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	163, 204
HpyCH4V	TGCA	3 cut(s)	120, 262, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 23, 47, 121
Kzo9I	GATC	3 cut(s)	12, 83, 170
LmnI	GCTCC	2 cut(s)	44, 302
LpnPI	CCDG	8 cut(s)	27, 76, 153, 208, 302, 344, 371, 405
Lsp1109I	GCAGC	2 cut(s)	59, 407
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	3 cut(s)	14, 85, 172
MboI	GATC	3 cut(s)	12, 83, 170
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	4 cut(s)	315, 325, 401, 420
MlyI	GAGTC	2 cut(s)	159, 382
MnlI	CCTC	4 cut(s)	31, 37, 120, 186
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	3 cut(s)	281, 324, 369
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	4 cut(s)	14, 23, 47, 121
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	3 cut(s)	12, 83, 170
NlaIV	GGNNCC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	79, 130
PkrI	GCNGC	3 cut(s)	7, 49, 397
Ple19I	CGATCG	2 cut(s)	15, 173
PleI	GAGTC	2 cut(s)	158, 382
PpsI	GAGTC	2 cut(s)	158, 382
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	397
PvuI	CGATCG	2 cut(s)	15, 173
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	3 cut(s)	281, 324, 369
SatI	GCNGC	3 cut(s)	6, 48, 396
Sau3AI	GATC	3 cut(s)	12, 83, 170
SchI	GAGTC	2 cut(s)	159, 382
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	393
Sse9I	AATT	4 cut(s)	315, 325, 401, 420
SsiI	CCGC	3 cut(s)	5, 113, 124
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	163, 204
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	315, 325, 401, 420
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	79, 130
Tru1I	TTAA	3 cut(s)	281, 324, 369
Tru9I	TTAA	3 cut(s)	281, 324, 369
TseI	GCWGC	2 cut(s)	47, 395
TspDTI	ATGAA	2 cut(s)	197, 327
XcmI	CCANNNNNNNNNTGG	2 cut(s)	296, 337
XmiI	GTMKAC	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.