Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

3702065 .. 3703543

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGGGCATTACTAAATTTACGTTTGGTTAACGGGTTCTTCTACCCTGCGCCGTTCCCTTGTGCTCACCGATTCAGCGAACCCCTCCCTCCCGGCGCCATTTTCTTGTCGCCCGCCGTCTGGAACTCCCACATCCAGGGCCTTGTCCAAGGAGAAAGACCGTCACCTAAAGTAATGGCCGCCAAGATATGCATAGCCATTCGATCATTTGGTCGTCCATTGACGGAAAACATCAACTGGGGACTTCCACCTCACACACGGAAGATTGCACTGCCGGAATCAAGAGTCTTGTACACTGTGTTACGATCACCTCATGTTGATAAAAAGTCCAGAGAACAGTTTGAAATGAATGTCAAGAAACAGTTTCTGGTCATAAACACAGAAACACATGAATTGCAAAAGAAGTTCTTTTGGTTAAAGCGCCAGCGCATATTTGGAGCCCAATACGAACTCCGATTTTCTTGCAAGACCCGTTTGGACAAGGAAAAACTCCAGAGATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

169

Amino Acids

19.64

Weight (kDa)

10.32

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	2 cut(s)	114, 180
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	120, 136
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	135
Alw21I	GWGCWC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	139, 177
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	4 cut(s)	52, 98, 423, 429
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	59, 156, 300
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	37, 101
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	93
BfoI	RGCGCY	2 cut(s)	99, 424
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	93, 137
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	97, 439
BmrFI	CCNGG	2 cut(s)	93, 137
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	136, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 136
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	136, 148
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	120, 136
BseNI	ACTGG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	141, 179
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	93, 275
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	120, 136
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	141, 179
Bsp1286I	GDGCHC	2 cut(s)	67, 442
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	203, 305
BspACI	CCGC	2 cut(s)	114, 180
BspANI	GGCC	2 cut(s)	141, 179
BspLI	GGNNCC	2 cut(s)	97, 439
BspT107I	GGYRCC	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	136, 148
BssMI	GATC	2 cut(s)	203, 305
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	162, 298, 339, 363
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	114, 425
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	2 cut(s)	99, 424
BstHHI	GCGC	4 cut(s)	52, 98, 423, 429
BstKTI	GATC	2 cut(s)	206, 308
BstMBI	GATC	2 cut(s)	203, 305
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	91, 135
BsuRI	GGCC	2 cut(s)	141, 179
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	269, 294
Cac8I	GCNNGC	2 cut(s)	114, 425
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	4 cut(s)	52, 98, 423, 429
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	314, 389
CviJI	RGCY	4 cut(s)	141, 179, 197, 440
CviKI_1	RGCY	4 cut(s)	141, 179, 197, 440
CviQI	GTAC	1 cut(s)	292
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	2 cut(s)	205, 307
DpnII	GATC	2 cut(s)	203, 305
EaeI	YGGCCR	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	317, 392
FaiI	YATR	6 cut(s)	190, 194, 315, 374, 390, 431
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	313, 388
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	4 cut(s)	51, 97, 422, 428
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	2 cut(s)	99, 424
HaeIII	GGCC	2 cut(s)	141, 179
HapII	CCGG	2 cut(s)	93, 275
HhaI	GCGC	4 cut(s)	52, 98, 423, 429
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	317, 392
Hin6I	GCGC	4 cut(s)	50, 96, 421, 427
HinP1I	GCGC	4 cut(s)	50, 96, 421, 427
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	72, 278, 285
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	93, 275
HphI	GGTGA	3 cut(s)	59, 156, 300
Hpy166II	GTNNAC	2 cut(s)	31, 294
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	5 cut(s)	121, 282, 330, 355, 493
Hpy8I	GTNNAC	2 cut(s)	31, 294
HpyCH4III	ACNGT	4 cut(s)	162, 298, 339, 363
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	192, 269, 397, 465
HpySE526I	ACGT	1 cut(s)	22
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	317, 392
HspAI	GCGC	4 cut(s)	50, 96, 421, 427
KasI	GGCGCC	1 cut(s)	95
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	203, 305
LmnI	GCTCC	1 cut(s)	437
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	162, 300
MalI	GATC	2 cut(s)	205, 307
MboI	GATC	2 cut(s)	203, 305
MboII	GAAGA	2 cut(s)	31, 274
MhlI	GDGCHC	2 cut(s)	67, 442
MluCI	AATT	2 cut(s)	16, 392
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	95, 99, 261, 321
Mph1103I	ATGCAT	1 cut(s)	194
MseI	TTAA	2 cut(s)	30, 416
MspI	CCGG	2 cut(s)	93, 275
MspR9I	CCNGG	2 cut(s)	93, 137
MvaI	CCWGG	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	203, 305
NlaIII	CATG	2 cut(s)	317, 392
NlaIV	GGNNCC	2 cut(s)	97, 439
NmuCI	GTSAC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	72, 278
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	293
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	97, 439
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	30, 416
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	203, 305
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	93, 137
SduI	GDGCHC	2 cut(s)	67, 442
SetI	ASST	4 cut(s)	25, 169, 253, 313
SfoI	GGCGCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	16, 392
SsiI	CCGC	2 cut(s)	114, 180
SspDI	GGCGCC	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	91, 135
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	162, 298, 339, 363
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	16, 392
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	72, 278
Tru1I	TTAA	2 cut(s)	30, 416
Tru9I	TTAA	2 cut(s)	30, 416
TscAI	CASTG	2 cut(s)	276, 301
TseFI	GTSAC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	362, 405
TspGWI	ACGGA	2 cut(s)	239, 274
TspRI	CASTG	2 cut(s)	276, 301
XapI	RAATTY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.