Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

5914025 .. 5914291

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1062900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCTGCCAAAATATGCATAGCCATTATTGTTTCGTCGTCCATTAACAGAAAACGTTGGGGGCTTCCGCCTTATACGTGGAAGATTGTATTGCCTGAATCACGAGTCTTATATAATGTTTTACGAACACCTCATGTTGATAAAAAGTCCAGACAACAGTTTGAAATGAGTATCAAGAAACAGTTTCTCGTCATAAAAACAAAAACGCATGAATTGCAAGAAGTAGTTTTGGTTAAAACGACGGCGCGTAGTTGGAGCCCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

89

Amino Acids

10.26

Weight (kDa)

10.45

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	27 - 74	6.1e-08	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	68
AclI	AACGTT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	257
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	159, 183
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	247
CviAII	CATG	2 cut(s)	134, 209
CviJI	RGCY	4 cut(s)	5, 23, 64, 258
CviKI_1	RGCY	4 cut(s)	5, 23, 64, 258
EciI	GGCGGA	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	2 cut(s)	137, 212
FaiI	YATR	9 cut(s)	16, 20, 75, 112, 114, 135, 194, 210, 265
FatI	CATG	2 cut(s)	133, 208
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	137, 212
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	98, 105
Hpy188III	TCNNGA	3 cut(s)	102, 150, 175
Hpy99I	CGWCG	2 cut(s)	40, 244
HpyCH4III	ACNGT	2 cut(s)	159, 183
HpyCH4IV	ACGT	2 cut(s)	55, 77
HpyCH4V	TGCA	2 cut(s)	18, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpySE526I	ACGT	2 cut(s)	55, 77
Hsp92II	CATG	2 cut(s)	137, 212
HspAI	GCGC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	2 cut(s)	108, 163
MaeII	ACGT	2 cut(s)	55, 77
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	20
MseI	TTAA	2 cut(s)	45, 234
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	137, 212
NlaIV	GGNNCC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	45, 234
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	3 cut(s)	58, 80, 133
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	159, 183
TaiI	ACGT	2 cut(s)	58, 80
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	45, 234
Tru9I	TTAA	2 cut(s)	45, 234
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.