Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Forward (+)

2796176 .. 2798605

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACAACCAGAATATGCGTTGCGATTCGATCTTTTGATAAACACCCCTTGGGACTTCCAGCTTGCGCGCGGAGGGTTCGGTTGCCTGACACACGAGTGTTATATACTGTGCTACGATCGCCTCATGTTGATAAGAAATCCAGAGAGCAGTTTCATATGATAACCAAAAAGCAACTTCTGGTCATAGACACAAAAGCAAATGAGTTGCAGAAGAAGTTCTTTTGGTTGAAACGCCAGCGTATACTTGGAGCTCAGTATGAAATTATATTCAATACCAAGACCCGTTTGGATAAGGGAAAGCTCCAGACTTTGCTTAATAAGGAAACTGAAACGACTCCTACAGCAGAATTGGGGTTGAAGTCTATAATTTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

126

Amino Acids

14.52

Weight (kDa)

10.33

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	22 - 73	4.6e-10	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	2 cut(s)	68, 70
AciI	CCGC	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	229, 271, 358
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	62, 251, 301
AluI	AGCT	3 cut(s)	62, 251, 301
Alw21I	GWGCWC	1 cut(s)	253
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	68, 70
BanII	GRGCYC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	372
BsePI	GCGCGC	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	68, 70
Bsh1285I	CGRYCG	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	29, 116
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	68, 70
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	48
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	2 cut(s)	29, 116
BssNAI	GTATAC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	64, 68, 236
BstDEI	CTNAG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	68, 70
BstHHI	GCGC	2 cut(s)	68, 70
BstKTI	GATC	2 cut(s)	32, 119
BstMBI	GATC	2 cut(s)	29, 116
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	2 cut(s)	68, 70
BstZ17I	GTATAC	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	64, 68, 236
CfoI	GCGC	2 cut(s)	68, 70
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	3 cut(s)	62, 251, 301
CviKI_1	RGCY	3 cut(s)	62, 251, 301
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	31, 118
DpnII	GATC	2 cut(s)	29, 116
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	128
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	253
GlaI	GCGC	2 cut(s)	67, 69
GsuI	CTGGAG	1 cut(s)	287
HhaI	GCGC	2 cut(s)	68, 70
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	2 cut(s)	66, 68
HinP1I	GCGC	2 cut(s)	66, 68
HinfI	GANTC	2 cut(s)	25, 334
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	141, 304
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	2 cut(s)	66, 68
Kzo9I	GATC	2 cut(s)	29, 116
LmnI	GCTCC	2 cut(s)	248, 306
LpnPI	CCDG	7 cut(s)	22, 72, 99, 154, 164, 248, 317
MalI	GATC	2 cut(s)	31, 118
MboI	GATC	2 cut(s)	29, 116
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	261, 347, 366
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	66, 132
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	68, 70
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	2 cut(s)	29, 116
NlaIII	CATG	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	95
PauI	GCGCGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	25
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	253
PteI	GCGCGC	1 cut(s)	66
PvuI	CGATCG	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	29, 116
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	3 cut(s)	64, 253, 303
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	261, 347, 366
SsiI	CCGC	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	261, 347, 366
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	143, 273
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 283
XmiI	GTMKAC	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.