Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001899.1

Orthogroup ID

OG0003882

Physical Location & Seq

Genomic Coordinates Reverse (-)

16813 .. 21427

Gene Structure 4615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001899.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgagagcctggtgttggtctggcagtttggggtggagagatgttcatgggtgggggcgggtctccgtgcaagggtggaattacagaggcgagttcgggttgggggaggttccatgcggtgggtttgctattcagggcccattgcggtttagatttggtatgggggagttggtcactgacctcactattccagcaacagggatttccaaatggtcgaggtcattcactcaacgatgggacaaggttcttgacggcggtcttttgagttttagtagggtgctatgtcatgtaaatggtgtcatctctaaggacgaggactatttggttcaattctggtttacttttggtgtcgattcgcgacgagtgatcctttacacatggtctggtacttttagacacggtgttgaagaggacgcagtcttctgtgcagttgattacgagacgaccagttctcctggcagcaatgagaccaaccttccgcccttcaccgccgactgctgtggtttcatcgcaaaacgggccgtcgaatcgccgatagttagggaaatctccattatagtcattgaggttggagcagcagtgatgacaaccagaatatgtgttgcgattcgatcttttgagaaatatccattgggacttctgccttgcacgcggaggattcagttgcctgacacatgcgtcttatataccgtgttacgatcacctcatattgataagaagtccagagaacaatttcatatgataaccaagaaactacttctggtcatagacgcaaaagcaaatgagttgcaaaagaagttcttttggttaaaacgccagcgtatacttggagctcaatatgaaattatattcaactcaaagacccgtttggataagggaaaactgcagactttggttaataaggaaactgacacaactcctgcagcagaattggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

312

Amino Acids

35.3

Weight (kDa)

9.03

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22300
fragaria_vesca	FvH4_7g02510
malus_domestica	MD07G1062900.v1.1 MD12G1044600.v1.1 MD15G1374400.v1.1
prunus_persica	Prupe.4G282300_v2.0.a1 Prupe.7G029400_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1 Prupe.7G030100_v2.0.a1
pyrus_communis	pycom12g03840
rosa_chinensis	RchiOBHm_Chr1g0321141 RchiOBHm_Chr2g0149911
rosa_laevigata	RLG00000030436
rosa_multiflora	Rmu_sc0001899.1_g000003 Rmu_sc0004668.1_g000002 Rmu_sc0007977.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433750 Rroxscaffold_4G00328060
rosa_rugosa	Rorug01G0031600 Rorug02G0283900 Rorug02G0414800 Rorug02G0414900 Rorug02G0415000
rosa_samantha	Rh1AG043300 Rh1BG040500 Rh1CG045700 Rh1DG050500 Rh2BG488300 Rh2CG323700 Rh2DG497400
rosa_wichuraiana	Rw0G001060 Rw1G003800 Rw2G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	2 cut(s)	358, 652
AciI	CCGC	7 cut(s)	58, 117, 145, 255, 479, 489, 652
AclWI	GGATC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	4 cut(s)	15, 72, 119, 197
AgsI	TTSAA	3 cut(s)	329, 407, 853
AjnI	CCWGG	2 cut(s)	8, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	1 cut(s)	833
AluI	AGCT	1 cut(s)	833
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	3 cut(s)	67, 434, 461
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	2 cut(s)	136, 519
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	459, 575, 923
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	3 cut(s)	136, 137, 519
AsuHPI	GGTGA	2 cut(s)	478, 693
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	140, 835
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	3 cut(s)	471, 587, 935
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	268, 506
BciT130I	CCWGG	2 cut(s)	10, 456
BcoDI	GTCTC	3 cut(s)	67, 434, 461
BfmI	CTRYAG	2 cut(s)	884, 921
BisI	GCNGC	3 cut(s)	460, 576, 924
BlsI	GCNGC	3 cut(s)	461, 577, 925
Bme1390I	CCNGG	2 cut(s)	10, 456
BmgT120I	GGNCC	3 cut(s)	136, 137, 519
BmiI	GGNNCC	2 cut(s)	111, 138
BmrFI	CCNGG	2 cut(s)	10, 456
BoxI	GACNNNNGTC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	412
BsaI	GGTCTC	2 cut(s)	67, 461
BsaXI	ACNNNNNCTCC	4 cut(s)	436, 466, 564, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 72, 119, 197
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	2 cut(s)	140, 469
BseBI	CCWGG	2 cut(s)	10, 456
BseLI	CCNNNNNNNGG	4 cut(s)	15, 72, 119, 197
BseMI	GCAATG	2 cut(s)	140, 469
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	471, 587, 935
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	358, 652
BshFI	GGCC	2 cut(s)	138, 521
BsiHKAI	GWGCWC	1 cut(s)	835
BslFI	GGGAC	2 cut(s)	251, 648
BslI	CCNNNNNNNGG	4 cut(s)	15, 72, 119, 197
BsmAI	GTCTC	3 cut(s)	67, 434, 461
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	251, 648
BsnI	GGCC	2 cut(s)	138, 521
Bso31I	GGTCTC	2 cut(s)	67, 461
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 835
Bsp143I	GATC	3 cut(s)	366, 611, 698
Bsp68I	TCGCGA	1 cut(s)	358
BspACI	CCGC	7 cut(s)	58, 117, 145, 255, 479, 489, 652
BspANI	GGCC	2 cut(s)	138, 521
BspFNI	CGCG	2 cut(s)	358, 652
BspLI	GGNNCC	2 cut(s)	111, 138
BspMAI	CTGCAG	2 cut(s)	888, 925
BspPI	GGATC	1 cut(s)	361
BspTNI	GGTCTC	2 cut(s)	67, 461
BsrDI	GCAATG	2 cut(s)	140, 469
BsrI	ACTGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	366, 611, 698
BssNAI	GTATAC	1 cut(s)	824
Bst1107I	GTATAC	1 cut(s)	824
Bst2UI	CCWGG	2 cut(s)	10, 456
Bst4CI	ACNGT	2 cut(s)	401, 691
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	650, 818
BstDEI	CTNAG	1 cut(s)	306
BstFNI	CGCG	2 cut(s)	358, 652
BstKTI	GATC	3 cut(s)	369, 614, 701
BstMAI	GTCTC	3 cut(s)	67, 434, 461
BstMBI	GATC	3 cut(s)	366, 611, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 649
BstNI	CCWGG	2 cut(s)	10, 456
BstNSI	RCATGY	1 cut(s)	678
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	8, 454
BstSFI	CTRYAG	2 cut(s)	884, 921
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	2 cut(s)	358, 652
BstV1I	GCAGC	3 cut(s)	471, 587, 935
BstV2I	GAAGAC	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	138, 521
BtgZI	GCGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	174, 585
BtuMI	TCGCGA	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	650, 818
Cfr13I	GGNCC	3 cut(s)	136, 137, 519
CseI	GACGC	3 cut(s)	422, 667, 779
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	5 cut(s)	47, 114, 287, 378, 675
CviJI	RGCY	4 cut(s)	8, 138, 521, 833
CviKI_1	RGCY	4 cut(s)	8, 138, 521, 833
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	368, 613, 700
DpnII	GATC	3 cut(s)	366, 611, 698
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	833
Eco24I	GRGCYC	2 cut(s)	140, 835
Eco31I	GGTCTC	2 cut(s)	67, 461
Eco53kI	GAGCTC	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	8, 454
EcoT38I	GRGCYC	2 cut(s)	140, 835
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	5 cut(s)	50, 117, 290, 381, 678
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	2 cut(s)	251, 648
FatI	CATG	5 cut(s)	46, 113, 286, 377, 674
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	738
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	3 cut(s)	460, 576, 924
FriOI	GRGCYC	2 cut(s)	140, 835
Fsp4HI	GCNGC	3 cut(s)	460, 576, 924
GluI	GCNGC	3 cut(s)	460, 576, 924
HaeIII	GGCC	2 cut(s)	138, 521
HgaI	GACGC	3 cut(s)	422, 667, 779
Hin1II	CATG	5 cut(s)	50, 117, 290, 381, 678
HinfI	GANTC	4 cut(s)	353, 527, 607, 658
HphI	GGTGA	2 cut(s)	478, 693
Hpy166II	GTNNAC	2 cut(s)	339, 824
Hpy188III	TCNNGA	3 cut(s)	248, 357, 723
Hpy8I	GTNNAC	2 cut(s)	339, 824
Hpy99I	CGWCG	2 cut(s)	363, 527
HpyAV	CCTTC	2 cut(s)	485, 493
HpyCH4III	ACNGT	2 cut(s)	401, 691
HpyCH4V	TGCA	6 cut(s)	70, 428, 648, 790, 886, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 649
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	50, 117, 290, 381, 678
Kzo9I	GATC	3 cut(s)	366, 611, 698
LmnI	GCTCC	2 cut(s)	572, 830
Lsp1109I	GCAGC	3 cut(s)	471, 587, 935
MaeIII	GTNAC	2 cut(s)	172, 693
MalI	GATC	3 cut(s)	368, 613, 700
MboI	GATC	3 cut(s)	366, 611, 698
MboII	GAAGA	2 cut(s)	412, 419
MhlI	GDGCHC	2 cut(s)	140, 835
MluCI	AATT	5 cut(s)	79, 329, 731, 843, 929
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	9 cut(s)	80, 100, 191, 210, 307, 403, 559, 648, 714
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	809, 897
MslI	CAYNNNNRTG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	10, 456
MvaI	CCWGG	2 cut(s)	10, 456
MvnI	CGCG	2 cut(s)	358, 652
MwoI	GCNNNNNNNGC	2 cut(s)	518, 649
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	3 cut(s)	366, 611, 698
NlaIII	CATG	5 cut(s)	50, 117, 290, 381, 678
NlaIV	GGNNCC	2 cut(s)	111, 138
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	358
NspI	RCATGY	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	353, 527, 607, 658
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	461, 577, 925
PshAI	GACNNNNGTC	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	8, 454
PspGI	CCWGG	2 cut(s)	8, 454
PspN4I	GGNNCC	2 cut(s)	111, 138
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	3 cut(s)	136, 137, 519
PstI	CTGCAG	2 cut(s)	888, 925
PsyI	GACNNNGTC	1 cut(s)	416
RruI	TCGCGA	1 cut(s)	358
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	835
SaqAI	TTAA	2 cut(s)	809, 897
SatI	GCNGC	3 cut(s)	460, 576, 924
Sau3AI	GATC	3 cut(s)	366, 611, 698
Sau96I	GGNCC	3 cut(s)	136, 137, 519
ScrFI	CCNGG	2 cut(s)	10, 456
SduI	GDGCHC	2 cut(s)	140, 835
SetI	ASST	8 cut(s)	111, 183, 221, 246, 477, 570, 706, 835
SfcI	CTRYAG	2 cut(s)	884, 921
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	5 cut(s)	79, 329, 731, 843, 929
SsiI	CCGC	7 cut(s)	58, 117, 145, 255, 479, 489, 652
SstI	GAGCTC	1 cut(s)	835
StyD4I	CCNGG	2 cut(s)	8, 454
TaaI	ACNGT	2 cut(s)	401, 691
TaqI	TCGA	4 cut(s)	215, 351, 525, 610
TasI	AATT	5 cut(s)	79, 329, 731, 843, 929
TfiI	GAWTC	4 cut(s)	353, 527, 607, 658
Tru1I	TTAA	2 cut(s)	809, 897
Tru9I	TTAA	2 cut(s)	809, 897
TscAI	CASTG	2 cut(s)	181, 585
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	459, 575, 923
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	35, 496, 725, 855
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	181, 585
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	119
XceI	RCATGY	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.