Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

8636331 .. 8639580

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAAGAAGAAACCCACGACGGATCTCTCGATCTCCAAGAGATTCGCAGGCGCGTGAAAGAGCTCGATTTCTTTCCCCGGAATTGCAGAGAAGAGCCTGTAGAATCGTGTAGTTCCGATTACGAGACTCTGGTGGTTCAAGATTTTGTTCTTCAGTTTGAACCAAAGGTGAAAGAGATTGTTGAAGAATACGGCGATGTTGATTTATTGGATGTTGAAGATTCAGATGCTTACTTGGAGTACTTGAGAAATGAGCTTCAGTCTGTGGAGGCTGAAAGTGCCAAAGTTTCTGAAGAAATTGAACGTCTTTCTCAGTCTCATGCCCAAGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTCATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGAAGTATGTGAAGTGATTGATGATGACAAGTTTAAGATGTTTGAACTCGAAAATCAGATGGAGGAGAAAAGGATGATTCTTAAGTCATTGGAAGATCTGGATTCGTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGACGCATTGACAGGCTTGAAGGTGCTCGAGTTTGACGGAAACTTTATTAGGCTCCAACTGCGAACATATATTCAAAAACTAGACGGTTTTCTTGGACAGCACAAATTTGACCACATTACTGAGCCATCTGAATTGATCCATGAATTGCTAATATACCTTAAGGATAAAACTACAGAGATAACAAAATTTGAGATGTTTCCAAATGATATATACATAGGAGACATCATCGAGGCAGCTGATTCTTTCAGGCAGGTAAGGTTACACTCTGCAGTGCTAGACACAAGATCTTCAGTCCAGTGGGTTGTCGCCAAAGTGCAAGATAAAATTATTTCAACAACTTTGAGAAAATATATTGTGATGAGTTCGAAAACAATTAGGTACACGTTTGAATACTACGACAAAGATGAAACAATTGTGGCTCATATAGCTGGAGGTATTGATGCATTTTTAAAGGTCTCTGATGGTTGGCCACTGCTGAATACCCCATTGAAGCTTGCATCTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGCCTTATCTGCAAAGTTGAGGAACTAGCGAATTCCTTGGATTTAGAGACCCGGCAAAACTTATCAGGCTTCATGGATGCAATTGAGAAAATACTCGTGGAGCAAACCCGTGAAGAACTCCAGTCCAATAAATCCTCCCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

48.52

Weight (kDa)

4.61

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	820
AccII	CGCG	1 cut(s)	54
AclWI	GGATC	3 cut(s)	31, 357, 709
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	4 cut(s)	683, 764, 1110, 1150
AcuI	CTGAAG	4 cut(s)	137, 242, 312, 852
AfaI	GTAC	2 cut(s)	242, 959
AflII	CTTAAG	2 cut(s)	518, 737
AflIII	ACRYGT	1 cut(s)	960
AhdI	GACNNNNNGTC	1 cut(s)	1099
AluBI	AGCT	6 cut(s)	64, 256, 432, 815, 1007, 1072
AluI	AGCT	6 cut(s)	64, 256, 432, 815, 1007, 1072
Alw21I	GWGCWC	2 cut(s)	66, 606
Alw26I	GTCTC	5 cut(s)	119, 321, 792, 1039, 1160
AlwI	GGATC	3 cut(s)	31, 357, 709
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	1046
ApeKI	GCWGC	3 cut(s)	429, 563, 812
ApoI	RAATTY	4 cut(s)	683, 764, 1110, 1150
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	2 cut(s)	79, 1171
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	944
AvaI	CYCGRG	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	1048
BanII	GRGCYC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BauI	CACGAG	1 cut(s)	1214
Bbv12I	GWGCWC	2 cut(s)	66, 606
BbvI	GCAGC	3 cut(s)	441, 550, 824
BccI	CCATC	4 cut(s)	430, 490, 712, 1034
BceAI	ACGGC	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	79, 1171
BcoDI	GTCTC	5 cut(s)	119, 321, 792, 1039, 1160
BfaI	CTAG	5 cut(s)	333, 426, 659, 854, 1145
BfmI	CTRYAG	4 cut(s)	99, 564, 750, 846
BfrI	CTTAAG	2 cut(s)	518, 737
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	2 cut(s)	532, 863
BisI	GCNGC	3 cut(s)	430, 564, 813
BlsI	GCNGC	3 cut(s)	431, 565, 814
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	79, 1171
BmeRI	GACNNNNNGTC	1 cut(s)	1099
BmeT110I	CYCGRG	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	2 cut(s)	79, 1171
BmsI	GCATC	5 cut(s)	217, 550, 1009, 1085, 1186
BpmI	CTGGAG	2 cut(s)	1029, 1223
Bpu14I	TTCGAA	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	265, 1067
BpuMI	CCSGG	2 cut(s)	79, 1171
BsaAI	YACGTR	1 cut(s)	548
BsaI	GGTCTC	2 cut(s)	1039, 1160
BsaJI	CCNNGG	2 cut(s)	77, 1155
Bse1I	ACTGG	3 cut(s)	378, 874, 1240
BseDI	CCNNGG	2 cut(s)	77, 1155
BseGI	GGATG	4 cut(s)	217, 400, 516, 1201
BseMII	CTCAG	4 cut(s)	326, 404, 690, 1109
BseNI	ACTGG	3 cut(s)	378, 874, 1240
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	441, 550, 824
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	1048
BsiHKAI	GWGCWC	2 cut(s)	66, 606
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	79, 1171
BsmAI	GTCTC	5 cut(s)	119, 321, 792, 1039, 1160
BsnI	GGCC	1 cut(s)	1048
Bso31I	GGTCTC	2 cut(s)	1039, 1160
BsoBI	CYCGRG	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	66, 606
Bsp143I	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	4 cut(s)	325, 403, 691, 1110
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	632
BspMAI	CTGCAG	2 cut(s)	568, 850
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	3 cut(s)	31, 357, 709
BspQI	GCTCTTC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	944
BspTI	CTTAAG	2 cut(s)	518, 737
BspTNI	GGTCTC	2 cut(s)	1039, 1160
BsrI	ACTGG	3 cut(s)	378, 874, 1240
BssECI	CCNNGG	2 cut(s)	77, 1155
BssMI	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
BssSI	CACGAG	1 cut(s)	1214
BssT1I	CCWWGG	1 cut(s)	1155
Bst2BI	CACGAG	1 cut(s)	1214
Bst4CI	ACNGT	2 cut(s)	369, 665
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	518, 737
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	50, 1074
BstDEI	CTNAG	4 cut(s)	312, 390, 699, 1118
BstF5I	GGATG	4 cut(s)	217, 400, 516, 1201
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	6 cut(s)	26, 34, 352, 535, 717, 866
BstMAI	GTCTC	5 cut(s)	119, 321, 792, 1039, 1160
BstMBI	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 637, 1004, 1128
BstSCI	CCNGG	2 cut(s)	77, 1169
BstSFI	CTRYAG	4 cut(s)	99, 564, 750, 846
BstSNI	TACGTA	1 cut(s)	548
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	441, 550, 824
BstX2I	RGATCY	4 cut(s)	23, 349, 532, 863
BstYI	RGATCY	4 cut(s)	23, 349, 532, 863
BsuRI	GGCC	1 cut(s)	1048
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	217, 400, 516, 1201
BtsI	GCAGTG	2 cut(s)	855, 1049
BtsIMutI	CAGTG	4 cut(s)	371, 855, 881, 1049
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	50, 1074
CfoI	GCGC	1 cut(s)	54
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	241, 958
CviAII	CATG	3 cut(s)	320, 719, 1192
CviQI	GTAC	2 cut(s)	241, 958
DdeI	CTNAG	4 cut(s)	312, 390, 699, 1118
DpnI	GATC	6 cut(s)	25, 33, 351, 534, 716, 865
DpnII	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
DraI	TTTAAA	1 cut(s)	1029
DriI	GACNNNNNGTC	1 cut(s)	1099
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	1 cut(s)	87
Eam1105I	GACNNNNNGTC	1 cut(s)	1099
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	64
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	1155
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	2 cut(s)	1039, 1160
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	137, 242, 312, 852
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	1150
EcoT14I	CCWWGG	1 cut(s)	1155
EcoT22I	ATGCAT	1 cut(s)	1024
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	1155
FaeI	CATG	3 cut(s)	323, 722, 1195
FatI	CATG	3 cut(s)	319, 718, 1191
Fnu4HI	GCNGC	3 cut(s)	430, 564, 813
FokI	GGATG	4 cut(s)	224, 407, 523, 1208
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	430, 564, 813
FspBI	CTAG	5 cut(s)	333, 426, 659, 854, 1145
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	430, 564, 813
GsuI	CTGGAG	2 cut(s)	1029, 1223
HaeIII	GGCC	1 cut(s)	1048
HapII	CCGG	2 cut(s)	79, 1171
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	323, 722, 1195
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	1070
HpaII	CCGG	2 cut(s)	79, 1171
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	960
Hpy188I	TCNGA	8 cut(s)	118, 226, 292, 495, 709, 1039, 1093, 1119
Hpy188III	TCNNGA	6 cut(s)	29, 140, 353, 392, 536, 1084
Hpy8I	GTNNAC	1 cut(s)	960
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	350, 592
HpyCH4III	ACNGT	2 cut(s)	369, 665
HpyCH4IV	ACGT	3 cut(s)	304, 547, 962
HpyCH4V	TGCA	9 cut(s)	87, 343, 566, 848, 895, 1022, 1076, 1131, 1199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 637, 1004, 1128
HpyF3I	CTNAG	4 cut(s)	312, 390, 699, 1118
HpySE526I	ACGT	3 cut(s)	304, 547, 962
Hsp92II	CATG	3 cut(s)	323, 722, 1195
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	636, 1219
Lsp1109I	GCAGC	3 cut(s)	441, 550, 824
LweI	GCATC	5 cut(s)	217, 550, 1009, 1085, 1186
MaeI	CTAG	5 cut(s)	333, 426, 659, 854, 1145
MaeII	ACGT	3 cut(s)	304, 547, 962
MaeIII	GTNAC	3 cut(s)	369, 543, 837
MalI	GATC	6 cut(s)	25, 33, 351, 534, 716, 865
MboI	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
MfeI	CAATTG	2 cut(s)	990, 1200
MflI	RGATCY	4 cut(s)	23, 349, 532, 863
MhlI	GDGCHC	2 cut(s)	66, 606
MlsI	TGGCCA	1 cut(s)	1048
MluNI	TGGCCA	1 cut(s)	1048
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	7 cut(s)	262, 493, 571, 802, 1004, 1132, 1264
Mox20I	TGGCCA	1 cut(s)	1048
Mph1103I	ATGCAT	1 cut(s)	1024
MscI	TGGCCA	1 cut(s)	1048
MseI	TTAA	4 cut(s)	471, 519, 738, 1028
Msp20I	TGGCCA	1 cut(s)	1048
MspA1I	CMGCKG	1 cut(s)	815
MspCI	CTTAAG	2 cut(s)	518, 737
MspI	CCGG	2 cut(s)	79, 1171
MspR9I	CCNGG	2 cut(s)	79, 1171
MunI	CAATTG	2 cut(s)	990, 1200
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	278, 637, 1004, 1128
NciI	CCSGG	2 cut(s)	79, 1171
NdeII	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
NlaIII	CATG	3 cut(s)	323, 722, 1195
NlaIV	GGNNCC	1 cut(s)	632
NmuCI	GTSAC	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	1024
NspV	TTCGAA	1 cut(s)	944
PaeR7I	CTCGAG	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	9 cut(s)	43, 104, 221, 329, 377, 415, 514, 539, 818
PkrI	GCNGC	3 cut(s)	431, 565, 814
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	632
PspXI	VCTCGAGB	1 cut(s)	605
PstI	CTGCAG	2 cut(s)	568, 850
PsuI	RGATCY	4 cut(s)	23, 349, 532, 863
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	242, 959
RsaNI	GTAC	2 cut(s)	241, 958
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	471, 519, 738, 1028
SatI	GCNGC	3 cut(s)	430, 564, 813
Sau3AI	GATC	6 cut(s)	23, 31, 349, 532, 714, 863
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	79, 1171
SduI	GDGCHC	2 cut(s)	66, 606
SfaNI	GCATC	5 cut(s)	217, 550, 1009, 1085, 1186
SfcI	CTRYAG	4 cut(s)	99, 564, 750, 846
Sfr274I	CTCGAG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	944
SlaI	CTCGAG	1 cut(s)	605
SmlI	CTYRAG	5 cut(s)	244, 518, 605, 737, 1082
SmoI	CTYRAG	5 cut(s)	244, 518, 605, 737, 1082
SnaBI	TACGTA	1 cut(s)	548
SspMI	CTAG	5 cut(s)	333, 426, 659, 854, 1145
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	77, 1169
StyI	CCWWGG	1 cut(s)	1155
TaaI	ACNGT	2 cut(s)	369, 665
TaiI	ACGT	3 cut(s)	307, 550, 965
TaqI	TCGA	6 cut(s)	30, 66, 486, 606, 807, 944
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	9 cut(s)	43, 104, 221, 329, 377, 415, 514, 539, 818
Tru1I	TTAA	4 cut(s)	471, 519, 738, 1028
Tru9I	TTAA	4 cut(s)	471, 519, 738, 1028
TscAI	CASTG	4 cut(s)	378, 855, 881, 1056
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	3 cut(s)	429, 563, 812
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	3 cut(s)	735, 999, 1180
TspGWI	ACGGA	2 cut(s)	36, 630
TspRI	CASTG	4 cut(s)	378, 855, 881, 1056
Vha464I	CTTAAG	2 cut(s)	518, 737
XapI	RAATTY	4 cut(s)	683, 764, 1110, 1150
XhoI	CTCGAG	1 cut(s)	605
XspI	CTAG	5 cut(s)	333, 426, 659, 854, 1145
ZrmI	AGTACT	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.