Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

41810407 .. 41822632

Gene Structure 12226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG195600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGACCCAGTTCCTTCTTCATCCCCACCACCCGACCTCACCGCCATTCACAGACGAGTGCTTGAGCTTGAAGAGATTCTCGAGCGATGCCGCCGAGACGATGATTCCGAATCACCTAATGCAGATTCTCAGGATTTACTAAACGACTGCGCTGTGTTTCTCCGGAGTAGTGTTGAAAAGATAGTAACTGATTGCTCTGATGTTGGTCTGTTAGGGGATCAAGATTTTGAAGCATATATGGAACGTTTTGAGCAGGAGCTTAGCTCCGTGGAGGCCGAGAGCGCTAGGGTTTCCGATGAAATTGAGGGTCTTGTTCGAACCCATGAGGAAGATTTTAACCGGCTCAATGTTGATATTGGGCAGTTGAAATGTTCATTGGATTTTGCTGGATCGCAGGATCTGGAGAAAGCAAAACTGGGTGCAGATGCTGATTGCCCTTCCTATGGAAAAGATCAGTTGGATCCGATGAATGTGAATGAAGACAAATTCAAGCTACTGGAACTTGAAAATCAGATTGACAAGAATCATATAATTTTGAAGTCCCTACAAGATTTAGAATGCAAACTTAAATGGCTTGATGCCACCGAACAGTTTGAGGATGCATTTTCGGGTCTCAAGGTCATTTCCTTTGAGGAAAACTGTATTAGGTTGTCACTTAGGACATACATTCCAAAGTCAAAAGGTCTGTCCCAACAAATAATTGAAGATACCACGTCTGTGAACCATGAGCTACTCATTGAACTAATGGAAGGGACTATGGACTTGAGGAATGTTGAGATTTTTCCAAATGATGTATGTGTAAGAGATATTCTTGATGCTGCGAAGTCTTTGAGTAAATCTTCATTGCAGTGGTTCGTAACAAAAGTGCAGGACAAAATCGTTAAGCACCATGGGGCGTCTAGTTGGAAAGAGTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.8

Weight (kDa)

4.51

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	2 cut(s)	45, 94
AclI	AACGTT	1 cut(s)	247
AclWI	GGATC	5 cut(s)	228, 400, 408, 458, 471
AcsI	RAATTY	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	899
AfeI	AGCGCT	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	74, 179, 233, 370, 493, 509, 541, 707, 743
AjiI	CACGTC	1 cut(s)	717
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	5 cut(s)	70, 262, 267, 496, 733
AluI	AGCT	5 cut(s)	70, 262, 267, 496, 733
Alw26I	GTCTC	2 cut(s)	93, 620
AlwI	GGATC	5 cut(s)	228, 400, 408, 458, 471
AlwNI	CAGNNNCTG	2 cut(s)	403, 431
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	821
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	155, 287
AsuHPI	GGTGA	2 cut(s)	34, 108
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	12, 489
BbvI	GCAGC	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	93, 620
BfaI	CTAG	2 cut(s)	288, 903
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	94, 822
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	2 cut(s)	95, 823
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	2 cut(s)	5, 428
BmsI	GCATC	5 cut(s)	80, 418, 571, 592, 808
BmuI	ACTGGG	2 cut(s)	5, 428
BpiI	GAAGAC	2 cut(s)	12, 489
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	3 cut(s)	86, 602, 787
BsaHI	GRCGYC	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	270, 892
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	11, 423, 504
Bse3DI	GCAATG	1 cut(s)	845
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	270, 892
BseGI	GGATG	2 cut(s)	23, 607
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	3 cut(s)	11, 423, 504
BseXI	GCAGC	1 cut(s)	808
BsgI	GTGCAG	2 cut(s)	444, 890
BshFI	GGCC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	166, 343
BslFI	GGGAC	3 cut(s)	529, 676, 769
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	2 cut(s)	93, 620
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	3 cut(s)	529, 676, 769
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	220, 392, 400, 454, 463
Bsp1720I	GCTNAGC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	2 cut(s)	45, 94
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	5 cut(s)	228, 400, 408, 458, 471
BspT104I	TTCGAA	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	845
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	11, 423, 504
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	270, 892
BssMI	GATC	5 cut(s)	220, 392, 400, 454, 463
BssNI	GRCGYC	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	892
Bst4CI	ACNGT	2 cut(s)	594, 644
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	132, 263, 659
BstDSI	CCRYGG	2 cut(s)	270, 892
BstF5I	GGATG	2 cut(s)	23, 607
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	155, 287
BstKTI	GATC	5 cut(s)	223, 395, 403, 457, 466
BstMAI	GTCTC	2 cut(s)	93, 620
BstMBI	GATC	5 cut(s)	220, 392, 400, 454, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	2 cut(s)	12, 489
BstX2I	RGATCY	2 cut(s)	400, 463
BstYI	RGATCY	2 cut(s)	400, 463
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	2 cut(s)	270, 892
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	23, 607
BtsI	GCAGTG	1 cut(s)	857
BtsIMutI	CAGTG	1 cut(s)	857
CaiI	CAGNNNCTG	2 cut(s)	403, 431
CfoI	GCGC	2 cut(s)	155, 287
Cfr10I	RCCGGY	1 cut(s)	342
CseI	GACGC	1 cut(s)	888
CviAII	CATG	3 cut(s)	326, 728, 893
CviJI	RGCY	8 cut(s)	70, 262, 267, 278, 346, 496, 577, 733
CviKI_1	RGCY	8 cut(s)	70, 262, 267, 278, 346, 496, 577, 733
DdeI	CTNAG	3 cut(s)	132, 263, 659
DpnI	GATC	5 cut(s)	222, 394, 402, 456, 465
DpnII	GATC	5 cut(s)	220, 392, 400, 454, 463
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	892
Eco31I	GGTCTC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	892
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	3 cut(s)	329, 731, 896
FaqI	GGGAC	3 cut(s)	529, 676, 769
FatI	CATG	3 cut(s)	325, 727, 892
Fnu4HI	GCNGC	2 cut(s)	94, 822
FokI	GGATG	2 cut(s)	10, 614
Fsp4HI	GCNGC	2 cut(s)	94, 822
FspBI	CTAG	2 cut(s)	288, 903
GlaI	GCGC	2 cut(s)	154, 286
GluI	GCNGC	2 cut(s)	94, 822
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	2 cut(s)	166, 343
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	2 cut(s)	155, 287
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	3 cut(s)	329, 731, 896
Hin6I	GCGC	2 cut(s)	153, 285
HinP1I	GCGC	2 cut(s)	153, 285
HinfI	GANTC	5 cut(s)	79, 107, 113, 128, 526
HpaII	CCGG	2 cut(s)	166, 343
HphI	GGTGA	2 cut(s)	34, 108
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	5 cut(s)	112, 202, 298, 468, 516
Hpy188III	TCNNGA	6 cut(s)	83, 134, 166, 224, 404, 815
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	3 cut(s)	27, 450, 746
HpyCH4III	ACNGT	2 cut(s)	594, 644
HpyCH4IV	ACGT	2 cut(s)	247, 716
HpyCH4V	TGCA	7 cut(s)	125, 425, 564, 605, 850, 871, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	132, 263, 659
HpySE526I	ACGT	2 cut(s)	247, 716
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	3 cut(s)	329, 731, 896
HspAI	GCGC	2 cut(s)	153, 285
Kpn2I	TCCGGA	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	220, 392, 400, 454, 463
LmnI	GCTCC	2 cut(s)	259, 272
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	5 cut(s)	80, 418, 571, 592, 808
MaeI	CTAG	2 cut(s)	288, 903
MaeII	ACGT	2 cut(s)	247, 716
MaeIII	GTNAC	3 cut(s)	187, 654, 859
MalI	GATC	5 cut(s)	222, 394, 402, 456, 465
MboI	GATC	5 cut(s)	220, 392, 400, 454, 463
MboII	GAAGA	7 cut(s)	12, 17, 86, 344, 494, 719, 834
MflI	RGATCY	2 cut(s)	400, 463
MluCI	AATT	4 cut(s)	303, 488, 534, 702
MmeI	TCCRAC	2 cut(s)	441, 887
MnlI	CCTC	7 cut(s)	50, 268, 301, 322, 592, 628, 762
Mph1103I	ATGCAT	1 cut(s)	607
MroI	TCCGGA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	3 cut(s)	339, 570, 885
MslI	CAYNNNNRTG	2 cut(s)	719, 850
MspI	CCGG	2 cut(s)	166, 343
Mva1269I	GAATGC	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	892
NdeII	GATC	5 cut(s)	220, 392, 400, 454, 463
NlaIII	CATG	3 cut(s)	329, 731, 896
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	2 cut(s)	122, 304
NmuCI	GTSAC	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	79, 107, 113, 128, 526
PkrI	GCNGC	2 cut(s)	95, 823
Psp1406I	AACGTT	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	403, 431
PsuI	RGATCY	2 cut(s)	400, 463
RseI	CAYNNNNRTG	2 cut(s)	719, 850
SaqAI	TTAA	3 cut(s)	339, 570, 885
SatI	GCNGC	2 cut(s)	94, 822
Sau3AI	GATC	5 cut(s)	220, 392, 400, 454, 463
SfaNI	GCATC	5 cut(s)	80, 418, 571, 592, 808
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	719, 850
SmlI	CTYRAG	4 cut(s)	65, 83, 617, 766
SmoI	CTYRAG	4 cut(s)	65, 83, 617, 766
Sse9I	AATT	4 cut(s)	303, 488, 534, 702
SsiI	CCGC	2 cut(s)	45, 94
SspMI	CTAG	2 cut(s)	288, 903
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	594, 644
TaiI	ACGT	2 cut(s)	250, 719
TaqI	TCGA	2 cut(s)	84, 319
TasI	AATT	4 cut(s)	303, 488, 534, 702
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	5 cut(s)	79, 107, 113, 128, 526
Tru1I	TTAA	3 cut(s)	339, 570, 885
Tru9I	TTAA	3 cut(s)	339, 570, 885
TscAI	CASTG	1 cut(s)	857
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	1 cut(s)	821
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	6 cut(s)	12, 315, 366, 485, 495, 834
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	1 cut(s)	857
XapI	RAATTY	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	288, 903
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.