Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Forward (+)

1589591 .. 1594630

Gene Structure 5040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1014100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAGATCCAATTTCTTCTTCAGAACCCCTCGACCTTATCACCATTCAGAGACAAGTGAGAGAGCTGGAAGAGGTTCTCGACCAAGATGATGCCTCAGAATTAACCCCTTCAGAGTCTCAAGATTTACTCAGAGACTGCGGCCTCCTCCTCCAGAGCAGACTTGAACAGATAGTGTCGGAATGTTCAGATGTCGGTCTCTTGGAGGATCAAGATTATGAAGCGTACTTGGGACGTTTCGAGCAGGAGCTCAACTCTGTGCAGGCTGAGAGCACCAAGGTCTCCAATGAAATCGAGGGTCTTGTTCGAACGCACGAGGAAGATTTTCATCGACTTGATATTGATCTTGCGCAGTTGAAGTGTTCATTGGATTTTGTTGCAAAAAAGGATCTGGAGAAAGAAAAGCAGGATGCAGATGTAAATTACATTAAAAACGGGAAGGATCAGTTGGATCAAATGAAGGTACTTGAACTTGAAAACCAGATTGAGAAGACCAGTAAAATTTTGAAGTCTTTACAGGATTTGGAATGTGAATTTAAATGGCTTGATGACACAGAAAAGATTGAGGATGAATTTACAGGTCTTAAGGTCATTTCTTTTGGGGAAAACTGTATTCGATTGTCACTTAGGACGTACATTCCAAAGCTAGAAGAACTTGTGCCCCAACAAAAAATTGCTGATGCCACTGAGCCTTCTCATGTGAATCATGAGCTACTTATTGAACTTCTGGAGGGGACTCTGGATTTAGGGAACGTTGAGATTTTTCCAAATGACGTATACATAAATGATATTCTTGATGCTGCAAAGTCTTTGAGTAAATCTTCATTGCAGTGGTTTGTAACAAAAGTGCAAGATAGAATTGTTCTATGCACCATGAGGCAACTAGTGGTAAAAAATGCAAATAAATCAAGACACTCGTTGCAGTACTTGGATAAAGATGAGACAATAGTAGCTCATGTGGTTGGAGAAGTTGATGCATTCATTAAGGTTCCACAAGGTTGGCCATTGCTAAGTTCTCCACTGAAACTGATATATCTGAAGAGCTCTGATCAACATTCAAAGGGAATTTCTTTAAGTTTTCTGTGCAAAGTTGAGGAACTGGCGAATTCCTTGGGTGTGCAAATTCGGCAGAGCCTATCAAGTTTTCTGGACGCAATTGCAAAAGTACTTGTCGAGCAGATGCGCATACAACTCCATGCTGAGACTTCTCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

46.09

Weight (kDa)

4.64

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	351, 1184
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	1 cut(s)	141
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	5 cut(s)	2, 216, 396, 450, 459
AcoI	YGGCCR	1 cut(s)	1001
AcsI	RAATTY	6 cut(s)	501, 533, 572, 1065, 1105, 1122
AcuI	CTGAAG	3 cut(s)	6, 96, 1058
AfaI	GTAC	5 cut(s)	227, 465, 635, 926, 1167
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	7 cut(s)	167, 358, 470, 476, 508, 722, 1059
AhlI	ACTAGT	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	5 cut(s)	36, 350, 382, 431, 463
AluBI	AGCT	6 cut(s)	67, 250, 646, 712, 953, 1044
AluI	AGCT	6 cut(s)	67, 250, 646, 712, 953, 1044
Alw21I	GWGCWC	3 cut(s)	252, 275, 1046
Alw26I	GTCTC	7 cut(s)	46, 123, 129, 203, 286, 935, 1196
AlwI	GGATC	5 cut(s)	2, 216, 396, 450, 459
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	2 cut(s)	142, 1001
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	6 cut(s)	501, 533, 572, 1065, 1105, 1122
Asp700I	GAANNNNTTC	2 cut(s)	75, 324
AspLEI	GCGC	2 cut(s)	352, 1185
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	663
BalI	TGGCCA	1 cut(s)	1003
BanII	GRGCYC	2 cut(s)	252, 1046
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	3 cut(s)	252, 275, 1046
BbvI	GCAGC	1 cut(s)	787
BclI	TGATCA	1 cut(s)	1048
BcoDI	GTCTC	7 cut(s)	46, 123, 129, 203, 286, 935, 1196
BcuI	ACTAGT	1 cut(s)	883
BfaI	CTAG	2 cut(s)	647, 884
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	2 cut(s)	142, 801
BlsI	GCNGC	2 cut(s)	143, 802
BmcAI	AGTACT	2 cut(s)	926, 1167
BmiI	GGNNCC	1 cut(s)	990
BmsI	GCATC	6 cut(s)	82, 400, 670, 787, 964, 1170
BpiI	GAAGAC	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	3 cut(s)	137, 413, 749
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	2 cut(s)	327, 342
BsaI	GGTCTC	2 cut(s)	203, 286
BsaJI	CCNNGG	2 cut(s)	276, 1110
Bse1I	ACTGG	2 cut(s)	495, 1104
Bse3DI	GCAATG	2 cut(s)	824, 1004
Bse8I	GATNNNNATC	2 cut(s)	327, 342
BseDI	CCNNGG	2 cut(s)	276, 1110
BseGI	GGATG	2 cut(s)	415, 574
BseJI	GATNNNNATC	2 cut(s)	327, 342
BseMI	GCAATG	2 cut(s)	824, 1004
BseMII	CTCAG	5 cut(s)	111, 145, 258, 678, 1191
BseNI	ACTGG	2 cut(s)	495, 1104
BseRI	GAGGAG	2 cut(s)	137, 140
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	144, 1003
BsiHKAI	GWGCWC	3 cut(s)	252, 275, 1046
BslFI	GGGAC	2 cut(s)	246, 748
BsmAI	GTCTC	7 cut(s)	46, 123, 129, 203, 286, 935, 1196
BsmFI	GGGAC	2 cut(s)	246, 748
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	2 cut(s)	144, 1003
Bso31I	GGTCTC	2 cut(s)	203, 286
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	4 cut(s)	252, 275, 663, 1046
Bsp143I	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	144, 1003
BspCNI	CTCAG	5 cut(s)	110, 144, 259, 679, 1192
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	990
BspPI	GGATC	5 cut(s)	2, 216, 396, 450, 459
BspQI	GCTCTTC	1 cut(s)	1034
BspT104I	TTCGAA	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	2 cut(s)	203, 286
BsrDI	GCAATG	2 cut(s)	824, 1004
BsrI	ACTGG	2 cut(s)	495, 1104
BssECI	CCNNGG	2 cut(s)	276, 1110
BssMI	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
BssNAI	GTATAC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	276, 1110
Bst1107I	GTATAC	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	611
Bst6I	CTCTTC	2 cut(s)	66, 1034
BstAFI	CTTAAG	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	7 cut(s)	97, 131, 267, 626, 687, 1010, 1200
BstF5I	GGATG	2 cut(s)	415, 574
BstHHI	GCGC	2 cut(s)	352, 1185
BstKTI	GATC	7 cut(s)	10, 211, 346, 391, 445, 454, 1051
BstMAI	GTCTC	7 cut(s)	46, 123, 129, 203, 286, 935, 1196
BstMBI	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	1126
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	7, 388
BstXI	CCANNNNNNTGG	1 cut(s)	999
BstYI	RGATCY	2 cut(s)	7, 388
BstZ17I	GTATAC	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	144, 1003
BtsCI	GGATG	2 cut(s)	415, 574
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	684, 836, 1019
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	2 cut(s)	352, 1185
CseI	GACGC	1 cut(s)	1160
Csp6I	GTAC	5 cut(s)	226, 464, 634, 925, 1166
CviAII	CATG	5 cut(s)	698, 707, 874, 956, 1196
CviQI	GTAC	5 cut(s)	226, 464, 634, 925, 1166
DdeI	CTNAG	7 cut(s)	97, 131, 267, 626, 687, 1010, 1200
DpnI	GATC	7 cut(s)	9, 210, 345, 390, 444, 453, 1050
DpnII	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
DraI	TTTAAA	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	1001
Eam1104I	CTCTTC	2 cut(s)	66, 1034
EarI	CTCTTC	2 cut(s)	66, 1034
Ecl136II	GAGCTC	2 cut(s)	250, 1044
Eco130I	CCWWGG	2 cut(s)	276, 1110
Eco24I	GRGCYC	2 cut(s)	252, 1046
Eco31I	GGTCTC	2 cut(s)	203, 286
Eco53kI	GAGCTC	2 cut(s)	250, 1044
Eco57I	CTGAAG	3 cut(s)	6, 96, 1058
EcoICRI	GAGCTC	2 cut(s)	250, 1044
EcoRI	GAATTC	1 cut(s)	1105
EcoT14I	CCWWGG	2 cut(s)	276, 1110
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	2 cut(s)	252, 1046
ErhI	CCWWGG	2 cut(s)	276, 1110
FaeI	CATG	5 cut(s)	701, 710, 877, 959, 1199
FaqI	GGGAC	2 cut(s)	246, 748
FatI	CATG	5 cut(s)	697, 706, 873, 955, 1195
FbaI	TGATCA	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	142, 801
FokI	GGATG	2 cut(s)	422, 581
FriOI	GRGCYC	2 cut(s)	252, 1046
Fsp4HI	GCNGC	2 cut(s)	142, 801
FspAI	RTGCGCAY	1 cut(s)	1184
FspBI	CTAG	2 cut(s)	647, 884
FspI	TGCGCA	2 cut(s)	351, 1184
GlaI	GCGC	2 cut(s)	351, 1184
GluI	GCNGC	2 cut(s)	142, 801
GsuI	CTGGAG	3 cut(s)	137, 413, 749
HaeIII	GGCC	2 cut(s)	144, 1003
HgaI	GACGC	1 cut(s)	1160
HhaI	GCGC	2 cut(s)	352, 1185
Hin1II	CATG	5 cut(s)	701, 710, 877, 959, 1199
Hin6I	GCGC	2 cut(s)	350, 1183
HinP1I	GCGC	2 cut(s)	350, 1183
HinfI	GANTC	3 cut(s)	116, 703, 736
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	9 cut(s)	25, 51, 100, 115, 134, 181, 190, 1038, 1048
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	4 cut(s)	120, 433, 454, 702
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	4 cut(s)	235, 632, 753, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1126
HpyF3I	CTNAG	7 cut(s)	97, 131, 267, 626, 687, 1010, 1200
HpySE526I	ACGT	4 cut(s)	235, 632, 753, 774
Hsp92II	CATG	5 cut(s)	701, 710, 877, 959, 1199
HspAI	GCGC	2 cut(s)	350, 1183
Ksp22I	TGATCA	1 cut(s)	1048
Kzo9I	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
LguI	GCTCTTC	1 cut(s)	1034
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	6 cut(s)	82, 400, 670, 787, 964, 1170
MaeI	CTAG	2 cut(s)	647, 884
MaeII	ACGT	4 cut(s)	235, 632, 753, 774
MaeIII	GTNAC	2 cut(s)	621, 838
MalI	GATC	7 cut(s)	9, 210, 345, 390, 444, 453, 1050
MboI	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
MboII	GAAGA	9 cut(s)	9, 12, 17, 83, 332, 502, 662, 813, 1051
MfeI	CAATTG	1 cut(s)	1155
MflI	RGATCY	2 cut(s)	7, 388
MhlI	GDGCHC	4 cut(s)	252, 275, 663, 1046
MlsI	TGGCCA	1 cut(s)	1003
MluNI	TGGCCA	1 cut(s)	1003
MlyI	GAGTC	2 cut(s)	125, 730
MmeI	TCCRAC	3 cut(s)	159, 429, 943
Mox20I	TGGCCA	1 cut(s)	1003
Mph1103I	ATGCAT	1 cut(s)	979
MroXI	GAANNNNTTC	2 cut(s)	75, 324
MscI	TGGCCA	1 cut(s)	1003
MseI	TTAA	6 cut(s)	104, 429, 537, 585, 984, 1073
MslI	CAYNNNNRTG	1 cut(s)	829
Msp20I	TGGCCA	1 cut(s)	1003
MspCI	CTTAAG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	1155
Mva1269I	GAATGC	1 cut(s)	977
MwoI	GCNNNNNNNGC	1 cut(s)	1126
NdeII	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
NlaIII	CATG	5 cut(s)	701, 710, 877, 959, 1199
NlaIV	GGNNCC	1 cut(s)	990
NmuCI	GTSAC	1 cut(s)	621
NsbI	TGCGCA	2 cut(s)	351, 1184
NsiI	ATGCAT	1 cut(s)	979
NspV	TTCGAA	1 cut(s)	307
PagI	TCATGA	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	1034
PctI	GAATGC	1 cut(s)	977
PdmI	GAANNNNTTC	2 cut(s)	75, 324
PfeI	GAWTC	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	143, 802
PleI	GAGTC	2 cut(s)	124, 730
PpsI	GAGTC	2 cut(s)	124, 730
Psp124BI	GAGCTC	2 cut(s)	252, 1046
Psp1406I	AACGTT	1 cut(s)	753
PspN4I	GGNNCC	1 cut(s)	990
PstNI	CAGNNNCTG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	7, 388
RsaI	GTAC	5 cut(s)	227, 465, 635, 926, 1167
RsaNI	GTAC	5 cut(s)	226, 464, 634, 925, 1166
RseI	CAYNNNNRTG	1 cut(s)	829
SacI	GAGCTC	2 cut(s)	252, 1046
SapI	GCTCTTC	1 cut(s)	1034
SaqAI	TTAA	6 cut(s)	104, 429, 537, 585, 984, 1073
SatI	GCNGC	2 cut(s)	142, 801
Sau3AI	GATC	7 cut(s)	7, 208, 343, 388, 442, 451, 1048
ScaI	AGTACT	2 cut(s)	926, 1167
SchI	GAGTC	2 cut(s)	125, 730
SduI	GDGCHC	4 cut(s)	252, 275, 663, 1046
SfaNI	GCATC	6 cut(s)	82, 400, 670, 787, 964, 1170
SfuI	TTCGAA	1 cut(s)	307
SmiI	ATTTAAAT	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	829
SmlI	CTYRAG	2 cut(s)	120, 584
SmoI	CTYRAG	2 cut(s)	120, 584
SpeI	ACTAGT	1 cut(s)	883
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	2 cut(s)	647, 884
SstI	GAGCTC	2 cut(s)	252, 1046
StyI	CCWWGG	2 cut(s)	276, 1110
SwaI	ATTTAAAT	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	4 cut(s)	238, 635, 756, 777
TaqI	TCGA	8 cut(s)	33, 81, 240, 294, 307, 331, 616, 1173
TaqII	GACCGA	1 cut(s)	185
TatI	WGTACW	2 cut(s)	924, 1165
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	6 cut(s)	104, 429, 537, 585, 984, 1073
Tru9I	TTAA	6 cut(s)	104, 429, 537, 585, 984, 1073
TscAI	CASTG	3 cut(s)	691, 836, 1026
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	8 cut(s)	234, 303, 317, 354, 473, 585, 813, 970
TspRI	CASTG	3 cut(s)	691, 836, 1026
Vha464I	CTTAAG	1 cut(s)	584
XapI	RAATTY	6 cut(s)	501, 533, 572, 1065, 1105, 1122
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	75, 324
XspI	CTAG	2 cut(s)	647, 884
ZrmI	AGTACT	2 cut(s)	926, 1167
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.