Rroxscaffold_5G00357940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002415
Physical Location & Seq
Reverse (-)
37897516 .. 37912713
15198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357940.1

Sequence Viewer

Length: 456 bp
ATGAATGTGAATGAAGACAAATTCAAGCTACTGGAACTTGAAAATCAGATTGACAAGAATCATATAATTTTGAAATCCCTACAAGATTTAGAATGCAAACTTAAATGGCTTGATGCCACCGAACAGTTTGAGGATGCATTTTCGGGTCTCAAGGTCATTTCCTTTGAGGAAAACTGTATTAGGTTGTCACTTAGGACATACATTCCAAAGTCAAAAGGTCTGTCCCAACAAATAATTGAAGATACCACATTTGTGAACCATGAGCTACTCATTGAACTAATGGAAGGGACTATGGACTTGAGGAATGTTGAGATTTTTCCAAATGATGTATGTGTAAGAGATATTCTTGATGCTGCGAAGTCTTTGAGTAAATCTTCATTGCAGTGGTTCGTAACAAAAGTGCAGGACAAAATCGTTAAGCACCATGGGGCGTCTAGTTGGAAAGAGTGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.51

Weight (kDa)

5.41

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 431
AgsI TTSAA 5 cut(s) 25, 41, 73, 239, 275
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 2 cut(s) 28, 265
AluI AGCT 2 cut(s) 28, 265
Alw26I GTCTC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
BmsI GCATC 3 cut(s) 103, 124, 340
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 134, 319
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 422
BslFI GGGAC 2 cut(s) 208, 301
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 208, 301
BsmI GAATGC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 126, 176
BstACI GRCGYC 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
CseI GACGC 1 cut(s) 420
CviAII CATG 2 cut(s) 260, 425
CviJI RGCY 3 cut(s) 28, 109, 265
CviKI_1 RGCY 3 cut(s) 28, 109, 265
DdeI CTNAG 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 263, 428
FaiI YATR 7 cut(s) 63, 65, 199, 261, 293, 331, 426
FaqI GGGAC 2 cut(s) 208, 301
FatI CATG 2 cut(s) 259, 424
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 435
GluI GCNGC 1 cut(s) 354
HgaI GACGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 2 cut(s) 263, 428
HinfI GANTC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 126, 176
HpyCH4V TGCA 5 cut(s) 96, 137, 382, 403, 450
HpyF3I CTNAG 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 2 cut(s) 263, 428
LpnPI CCDG 2 cut(s) 17, 389
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 3 cut(s) 103, 124, 340
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 186, 391
MboII GAAGA 3 cut(s) 26, 251, 366
MluCI AATT 3 cut(s) 20, 66, 234
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 3 cut(s) 124, 160, 294
Mph1103I ATGCAT 1 cut(s) 139
MseI TTAA 2 cut(s) 102, 417
MslI CAYNNNNRTG 2 cut(s) 251, 382
Mva1269I GAATGC 1 cut(s) 98
NcoI CCATGG 1 cut(s) 424
NlaIII CATG 2 cut(s) 263, 428
NmuCI GTSAC 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 251
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 251, 382
SaqAI TTAA 2 cut(s) 102, 417
SatI GCNGC 1 cut(s) 354
SetI ASST 5 cut(s) 30, 156, 185, 220, 267
SfaNI GCATC 3 cut(s) 103, 124, 340
SmiMI CAYNNNNRTG 2 cut(s) 251, 382
SmlI CTYRAG 2 cut(s) 149, 298
SmoI CTYRAG 2 cut(s) 149, 298
Sse9I AATT 3 cut(s) 20, 66, 234
SspMI CTAG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 126, 176
TasI AATT 3 cut(s) 20, 66, 234
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 102, 417
Tru9I TTAA 2 cut(s) 102, 417
TscAI CASTG 1 cut(s) 389
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 27, 366
TspRI CASTG 1 cut(s) 389
XapI RAATTY 1 cut(s) 20
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.