Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

37908945 .. 37912713

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGACCCAGTTCCTTCTTCAGCCCCGCCACCCGACCTCACCACCGTTCACAGGTCTCAATCCCTCTCCCTCTACTTCCGCCTCACATTCTTGTTCAATTTTCTCAATCAATTAATGCTTTCCCTCTTTCCAAAATTTGAAGACGAGTGCTTGAGCTCGAAGAGATTCTCGAGCGATGTCGCCGAGACGATGCTTCCGAATCACCTACTGCAGATTCTCAGGATTTACTTAAAAGACTGCGCTGTGTTTCTCCGGAGTAGAGTTGAAAAGATAGAATCGGATTGCTCTGATGTTTGTCTGTTAGGGGATCAAGATTTTGAAGCATATATGGGGCGTTTTGAGCAGGAGCTTAGCTCCGTGGAGGCCGAGAGCGCCAAGGTTTCCGATGAAATTGAGGGTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

4.48

Isoelectric Point (pI)

71.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	255
AciI	CCGC	2 cut(s)	29, 82
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	100, 143, 269, 323
AluBI	AGCT	3 cut(s)	159, 352, 357
AluI	AGCT	3 cut(s)	159, 352, 357
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	63, 182
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	255
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	245, 377
AsuHPI	GGTGA	2 cut(s)	34, 197
AvaI	CYCGRG	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	12, 150
Bbv12I	GWGCWC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	63, 182
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	378
BlpI	GCTNAGC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	2 cut(s)	12, 150
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	360, 378
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	360, 378
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	63, 182
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	310
Bsp1720I	GCTNAGC	1 cut(s)	353
BspACI	CCGC	2 cut(s)	29, 82
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	360, 378
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	221, 353
BstDSI	CCRYGG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	2 cut(s)	245, 377
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	63, 182
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 374
BstSFI	CTRYAG	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	12, 150
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	192
CfoI	GCGC	2 cut(s)	245, 377
CviJI	RGCY	5 cut(s)	26, 159, 352, 357, 368
CviKI_1	RGCY	5 cut(s)	26, 159, 352, 357, 368
DdeI	CTNAG	2 cut(s)	221, 353
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	182
FaiI	YATR	3 cut(s)	328, 330, 332
FauI	CCCGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	2 cut(s)	244, 376
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	256
HhaI	GCGC	2 cut(s)	245, 377
Hin6I	GCGC	2 cut(s)	243, 375
HinP1I	GCGC	2 cut(s)	243, 375
HinfI	GANTC	4 cut(s)	168, 202, 217, 278
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	2 cut(s)	34, 197
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	201, 283, 292, 388
Hpy188III	TCNNGA	4 cut(s)	172, 223, 256, 314
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 374
HpyF3I	CTNAG	2 cut(s)	221, 353
HspAI	GCGC	2 cut(s)	243, 375
Kpn2I	TCCGGA	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	349, 362
LpnPI	CCDG	5 cut(s)	24, 40, 208, 269, 332
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	404
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	4 cut(s)	12, 17, 155, 175
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	100, 113, 137, 393
MnlI	CCTC	7 cut(s)	50, 77, 83, 95, 137, 358, 391
MroI	TCCGGA	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	2 cut(s)	116, 233
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	343, 374
NdeII	GATC	1 cut(s)	310
NmeAIII	GCCGAG	2 cut(s)	211, 394
PaeR7I	CTCGAG	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	168, 202, 217, 278
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	116, 233
Sau3AI	GATC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	7 cut(s)	42, 59, 161, 210, 354, 359, 384
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	172
SmlI	CTYRAG	2 cut(s)	154, 172
SmoI	CTYRAG	2 cut(s)	154, 172
Sse9I	AATT	4 cut(s)	100, 113, 137, 393
SsiI	CCGC	2 cut(s)	29, 82
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	161, 173
TasI	AATT	4 cut(s)	100, 113, 137, 393
TfiI	GAWTC	4 cut(s)	168, 202, 217, 278
Tru1I	TTAA	2 cut(s)	116, 233
Tru9I	TTAA	2 cut(s)	116, 233
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.