Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

50696314 .. 50699459

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCGGACGACAGTTTGAGCCGAGAGAGAAGAAAAGCGACTTTGATCGAGCGAATTACGGTTCTCAATTGCAGACGCGGCCGGGACGATGGTTCCGAATCACCTACTACTGCAGATTCTCATGATTTACTTAATGACAGCGCTGTATTTCTTCAGGTACTATCTGATTGCTCTGAAGTTGGTCTGTTAGGGGATCAAGATTTTGAAGCATATATGGGACGTTTTGAGCAGGAGCTTAGCTCCATGGAGGTCGAGAATGCTAAGGTTTCTGATGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

4.3

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	5, 78
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	2 cut(s)	137, 195
AfaI	GTAC	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	2 cut(s)	235, 240
AluI	AGCT	2 cut(s)	235, 240
AlwI	GGATC	1 cut(s)	201
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	93
BccI	CCATC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	98, 231
BsmFI	GGGAC	2 cut(s)	98, 231
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	45, 193
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	5, 78
BspANI	GGCC	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	45, 193
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	14, 61
BstDEI	CTNAG	2 cut(s)	236, 261
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	48, 196
BstMBI	GATC	2 cut(s)	45, 193
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	243
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	143
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	122, 244
CviJI	RGCY	4 cut(s)	21, 81, 235, 240
CviKI_1	RGCY	4 cut(s)	21, 81, 235, 240
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	236, 261
DpnI	GATC	2 cut(s)	47, 195
DpnII	GATC	2 cut(s)	45, 193
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	137, 195
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	125, 247
FaiI	YATR	5 cut(s)	123, 211, 213, 215, 245
FaqI	GGGAC	2 cut(s)	98, 231
FatI	CATG	2 cut(s)	121, 243
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	125, 247
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	98, 116
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	93
Hpy188I	TCNGA	4 cut(s)	97, 166, 175, 271
Hpy188III	TCNNGA	3 cut(s)	122, 197, 253
HpyCH4III	ACNGT	2 cut(s)	14, 61
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	72, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	236, 261
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	125, 247
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	45, 193
LmnI	GCTCC	2 cut(s)	232, 245
LpnPI	CCDG	3 cut(s)	95, 140, 215
MaeII	ACGT	1 cut(s)	220
MalI	GATC	2 cut(s)	47, 195
MboI	GATC	2 cut(s)	45, 193
MboII	GAAGA	2 cut(s)	42, 143
MfeI	CAATTG	1 cut(s)	67
MluCI	AATT	3 cut(s)	54, 67, 276
MnlI	CCTC	1 cut(s)	241
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	45, 193
NlaIII	CATG	2 cut(s)	125, 247
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	98, 116
PkrI	GCNGC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	45, 193
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	106, 159, 223, 237, 242, 252, 267
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	54, 67, 276
SsiI	CCGC	2 cut(s)	5, 78
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	14, 61
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	48, 252
TasI	AATT	3 cut(s)	54, 67, 276
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	98, 116
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.