Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

32123420 .. 32127438

Gene Structure 4019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAAAACCCGGTTCCTTCTTCATCAGCCCCACCACCCGACCTCACCACCATTCACAGACGAGTGCTTGAGCTCGAAGAGATTCTCGAGCGATGTCGCCGAGACGATGATTCTGAATCACCTACTGCAGATTCTCAGGATTTACTTAACGACTGCGCTGTGTTTCTCCGGAGTAGAGTTGAAAAGATAGTATCTGATTGCTCTGATGTTGGTCTGTTAGGGGATCAAGATTTTGAAGCATATATGGAACGTTTTGAGCAGGAGCTTAGCTCTGTGAAGGCCGAGAGCGCTAAGGTTTCCGATGAAATTGAGGGTCTCATTCAAATCCATAAGGAAGATTTTAATCAGCTCAATGTTGATATTGGGCAGTTGAAATGTTCATTGGATTTTGCTGGATCGCAGGATCTGGAGAAAGCAAAACTGGGTGCAGATGCTGATTGCCCTTCATATGGAAAAGATCAGTTGGATCCGATGAATGTGAATGAAGACAAATTTAAGCTACTGGAACTTGAAAATCAGGTTGACAAGAATCATATAATTTTGAAGTCTCTACAAGATTTAGAATGCAAAGTTAAATGGCTTGACGCCACCGAACAGTTTGAGGATGCATTTTCAGGTCTCAAGGTCATTTCTTTTGAGGAAAACTGCATTAGATTGTCTCTTGGGACATACATTCCAAAGTCAAAAGGTCTGTCCCAACAAATAATTGAAGACACCACATCTGTGAATCATGAGCTACTAATTGAACTAATGGAGGGGACTATGGACTTGAGGAATGTTGAGATTTTTCCAAATGATGTATGTATAAGAGATATTCTTGATGCTGCGAAGTCTTTGAGTAAATCTTCATTGCAATGGTTCGTAACAAAAGTGCAAGACAAAATTGTTAAGCACCGTGGGGTGACTAGTGGGAAAGAGTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.7

Weight (kDa)

4.57

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	168
AclI	AACGTT	1 cut(s)	250
AclWI	GGATC	5 cut(s)	231, 403, 411, 461, 474
AcsI	RAATTY	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	585
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	8 cut(s)	182, 236, 323, 373, 512, 544, 710, 746
AhlI	ACTAGT	1 cut(s)	905
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	6 cut(s)	73, 265, 270, 349, 499, 736
AluI	AGCT	6 cut(s)	73, 265, 270, 349, 499, 736
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	5 cut(s)	96, 320, 552, 623, 663
AlwI	GGATC	5 cut(s)	231, 403, 411, 461, 474
AlwNI	CAGNNNCTG	2 cut(s)	406, 434
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	168
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	158, 290
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	37, 111, 913
AvaI	CYCGRG	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	492, 717
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	5 cut(s)	96, 320, 552, 623, 663
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	1 cut(s)	825
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	826
Bme1390I	CCNGG	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	15, 468
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	421, 595, 811
BmuI	ACTGGG	1 cut(s)	431
BpiI	GAAGAC	2 cut(s)	492, 717
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	3 cut(s)	89, 605, 790
BpuMI	CCSGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	585
BsaI	GGTCTC	2 cut(s)	320, 623
BsaJI	CCNNGG	1 cut(s)	895
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	426, 507
Bse3DI	GCAATG	2 cut(s)	848, 860
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	895
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	2 cut(s)	848, 860
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	426, 507
BseXI	GCAGC	1 cut(s)	811
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	11, 169
BslFI	GGGAC	3 cut(s)	679, 679, 772
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	5 cut(s)	96, 320, 552, 623, 663
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	3 cut(s)	679, 679, 772
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	2 cut(s)	320, 623
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	223, 395, 403, 457, 466
Bsp1720I	GCTNAGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	15, 468
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	5 cut(s)	231, 403, 411, 461, 474
BspTNI	GGTCTC	2 cut(s)	320, 623
BsrDI	GCAATG	2 cut(s)	848, 860
BsrI	ACTGG	2 cut(s)	426, 507
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	5 cut(s)	223, 395, 403, 457, 466
BssNI	GRCGYC	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	597, 896
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	585
BstDEI	CTNAG	3 cut(s)	135, 266, 291
BstDSI	CCRYGG	1 cut(s)	895
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	158, 290
BstKTI	GATC	5 cut(s)	226, 398, 406, 460, 469
BstMAI	GTCTC	5 cut(s)	96, 320, 552, 623, 663
BstMBI	GATC	5 cut(s)	223, 395, 403, 457, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	2 cut(s)	492, 717
BstX2I	RGATCY	2 cut(s)	403, 466
BstYI	RGATCY	2 cut(s)	403, 466
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	895
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	610
CaiI	CAGNNNCTG	2 cut(s)	406, 434
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	2 cut(s)	158, 290
CseI	GACGC	1 cut(s)	593
CviAII	CATG	1 cut(s)	731
CviJI	RGCY	9 cut(s)	29, 73, 265, 270, 281, 349, 499, 580, 736
CviKI_1	RGCY	9 cut(s)	29, 73, 265, 270, 281, 349, 499, 580, 736
DdeI	CTNAG	3 cut(s)	135, 266, 291
DpnI	GATC	5 cut(s)	225, 397, 405, 459, 468
DpnII	GATC	5 cut(s)	223, 395, 403, 457, 466
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	2 cut(s)	320, 623
Eco47III	AGCGCT	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	734
FaqI	GGGAC	3 cut(s)	679, 679, 772
FatI	CATG	1 cut(s)	730
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	825
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	2 cut(s)	157, 289
GluI	GCNGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	11, 169
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	158, 290
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	734
Hin6I	GCGC	2 cut(s)	156, 288
HinP1I	GCGC	2 cut(s)	156, 288
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	6 cut(s)	82, 110, 116, 131, 529, 727
HpaII	CCGG	2 cut(s)	11, 169
HphI	GGTGA	3 cut(s)	37, 111, 913
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	5 cut(s)	115, 196, 205, 301, 471
Hpy188III	TCNNGA	7 cut(s)	86, 137, 169, 227, 407, 731, 818
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	3 cut(s)	27, 271, 453
HpyCH4III	ACNGT	2 cut(s)	597, 896
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	8 cut(s)	128, 428, 567, 608, 648, 853, 874, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	135, 266, 291
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	734
HspAI	GCGC	2 cut(s)	156, 288
Kpn2I	TCCGGA	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	223, 395, 403, 457, 466
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	3 cut(s)	421, 595, 811
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	862, 901
MalI	GATC	5 cut(s)	225, 397, 405, 459, 468
MboI	GATC	5 cut(s)	223, 395, 403, 457, 466
MboII	GAAGA	6 cut(s)	12, 89, 347, 497, 722, 837
MflI	RGATCY	2 cut(s)	403, 466
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	6 cut(s)	306, 491, 537, 705, 741, 882
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	53, 304, 595, 631, 748, 765
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	5 cut(s)	147, 342, 495, 573, 888
MslI	CAYNNNNRTG	2 cut(s)	722, 853
MspI	CCGG	2 cut(s)	11, 169
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	569
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	5 cut(s)	223, 395, 403, 457, 466
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	2 cut(s)	15, 468
NmeAIII	GCCGAG	2 cut(s)	125, 307
NmuCI	GTSAC	1 cut(s)	901
NsiI	ATGCAT	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	730
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	6 cut(s)	82, 110, 116, 131, 529, 727
PkrI	GCNGC	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	15, 468
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	2 cut(s)	406, 434
PsuI	RGATCY	2 cut(s)	403, 466
RseI	CAYNNNNRTG	2 cut(s)	722, 853
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	5 cut(s)	147, 342, 495, 573, 888
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	5 cut(s)	223, 395, 403, 457, 466
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	3 cut(s)	421, 595, 811
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	722, 853
SmlI	CTYRAG	4 cut(s)	68, 86, 620, 769
SmoI	CTYRAG	4 cut(s)	68, 86, 620, 769
SpeI	ACTAGT	1 cut(s)	905
Sse9I	AATT	6 cut(s)	306, 491, 537, 705, 741, 882
SspMI	CTAG	1 cut(s)	906
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	597, 896
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	75, 87
TasI	AATT	6 cut(s)	306, 491, 537, 705, 741, 882
TfiI	GAWTC	6 cut(s)	82, 110, 116, 131, 529, 727
Tru1I	TTAA	5 cut(s)	147, 342, 495, 573, 888
Tru9I	TTAA	5 cut(s)	147, 342, 495, 573, 888
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	7 cut(s)	12, 318, 369, 435, 488, 498, 837
XapI	RAATTY	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	906
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.