Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Forward (+)

12857809 .. 12863575

Gene Structure 5767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAAGAAGACCCAATTCCTTCTTCAGAACCACTCGACCTTAACACCATTCAGAGACAAGTGAGAGAGCTGGAAGAGATTATCGAAAGTTGTCGCCAAGACGATGCCTCAGAATTATCCCCTTCAGATTCTGATGATTTAATCAGAAACTGCGGTCTCCTCCTCCAGAGCAGAGTTGAACAGATAGTATCAGAATGCTCTGATGTTGGTCTCTTAGAGGATCAAGAATTTGAAGCATACGTAGGACGTTTTGAACAGGAGCTCAACTCTGTGGAGGCTGAGAGCACCAAGGTCTCAAATGGAATTGAGGATCTCATTCGAACCCATGGGGAAGATTTTAATCGACTTGGCACTGATCTTGCACAGTTGAAATGTTCATTAGATTTTGTTGAAGAAAAGGATCTGGAGAAAGCAAAACTGGGTGCAGATGTTGATTACCATAAATGTGGGAAAGATCTGTTGGATCCGATGAATGTGAATGCAGACAAGTTTGAGCTACTGGAACTTGAAAATCAGATTGAGAAGAACAATATAATTTTGAAGTCTTTACAGGATTTAGAATGTACACTTAAATGGCTTGACAACACAGAACAGATTGAGGATGCAGTTACAGGTCTGAAGGTCATTGCTTTTGAGGGAAACTGCGTTAGGTTGTCACTTAGGACATACATTCCGAAGTTGGAAGACCTTTTCTCCCCAAAAAAAGTTGGAGATGCCACTGAGCCATCTGAAGTAAATCATGAGCTGCTAATTGAACTTCTGGAGGGGACTATGGGTTTAAGGAATGTTGAGATTTTTCCAAATGATGTATACATAAACGATATTCTTGATGCTGCAAAGTCTTTGAGGAAATCTTCATTGCAGTGGTTTGTAACAAAAGTGCAAGACAGAATAGTTCTATGCACCATGAGGCGACTAGTGGTAAAAAATGAAAACAAATCAAGACACTCATTGGAGTACTTGGATAAAGATGAGACAGTAGTGGCTCATGTGGTTGGAGGAGTTGATGCATTCATCAAGGTCCCTCAAGGTTGGCCATTGTTAAGTTCTCCATTGAAACTGATATACCTCAAGAGCTCTGATCAACATTCAAAGGGAATTTCTTTAAGTTTTCTTTGCACGGTTCAGGAATTGGCAAATTCGTTGGCTGTACGAATTCGGCAGACTCTATCGAGTTTTGTGGATGCTATTGAAAAAATACTTGTAGAGCAGATGTGCTCAGAAATCCATGGTGATGCTTCTGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

46.93

Weight (kDa)

4.55

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	810
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	5 cut(s)	228, 318, 408, 458, 471
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	4 cut(s)	227, 1098, 1138, 1155
AcuI	CTGAAG	4 cut(s)	9, 108, 638, 750
AfaI	GTAC	3 cut(s)	565, 959, 1152
AhlI	ACTAGT	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	4 cut(s)	7, 39, 443, 475
AluBI	AGCT	5 cut(s)	70, 262, 496, 745, 1077
AluI	AGCT	5 cut(s)	70, 262, 496, 745, 1077
Alw21I	GWGCWC	4 cut(s)	264, 287, 1079, 1220
Alw26I	GTCTC	5 cut(s)	49, 161, 215, 298, 968
AlwI	GGATC	5 cut(s)	228, 318, 408, 458, 471
AlwNI	CAGNNNCTG	2 cut(s)	131, 150
AoxI	GGCC	1 cut(s)	1034
ApeKI	GCWGC	2 cut(s)	745, 833
ApoI	RAATTY	4 cut(s)	227, 1098, 1138, 1155
AspS9I	GGNCC	1 cut(s)	1021
AsuHPI	GGTGA	1 cut(s)	1244
AsuII	TTCGAA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	1021
BalI	TGGCCA	1 cut(s)	1036
BamHI	GGATCC	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	264, 1079
BbsI	GAAGAC	2 cut(s)	15, 690
Bbv12I	GWGCWC	4 cut(s)	264, 287, 1079, 1220
BbvI	GCAGC	2 cut(s)	732, 820
BccI	CCATC	1 cut(s)	733
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	5 cut(s)	49, 161, 215, 298, 968
BcuI	ACTAGT	1 cut(s)	916
BfaI	CTAG	1 cut(s)	917
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	2 cut(s)	746, 834
BlsI	GCNGC	2 cut(s)	747, 835
BmcAI	AGTACT	1 cut(s)	959
Bme18I	GGWCC	1 cut(s)	1021
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	2 cut(s)	465, 1023
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	7 cut(s)	94, 592, 703, 820, 997, 1174, 1225
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	2 cut(s)	15, 690
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	3 cut(s)	149, 425, 782
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	1011, 1055
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	339
BsaI	GGTCTC	3 cut(s)	161, 215, 298
BsaJI	CCNNGG	3 cut(s)	288, 325, 1228
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bse1I	ACTGG	2 cut(s)	423, 504
Bse3DI	GCAATG	2 cut(s)	624, 857
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	288, 325, 1228
BseGI	GGATG	2 cut(s)	607, 1189
BseJI	GATNNNNATC	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	624, 857
BseMII	CTCAG	4 cut(s)	123, 270, 711, 1233
BseNI	ACTGG	2 cut(s)	423, 504
BseRI	GAGGAG	3 cut(s)	149, 152, 1014
BseXI	GCAGC	2 cut(s)	732, 820
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	1036
BsiHKAI	GWGCWC	4 cut(s)	264, 287, 1079, 1220
BslFI	GGGAC	2 cut(s)	781, 1007
BsmAI	GTCTC	5 cut(s)	49, 161, 215, 298, 968
BsmFI	GGGAC	2 cut(s)	781, 1007
BsmI	GAATGC	3 cut(s)	200, 484, 1010
BsnI	GGCC	1 cut(s)	1036
Bso31I	GGTCTC	3 cut(s)	161, 215, 298
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	264, 287, 1079, 1220
Bsp1407I	TGTACA	1 cut(s)	563
Bsp143I	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
Bsp19I	CCATGG	2 cut(s)	325, 1228
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	1036
BspCNI	CTCAG	4 cut(s)	122, 271, 712, 1232
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	465, 1023
BspPI	GGATC	5 cut(s)	228, 318, 408, 458, 471
BspT104I	TTCGAA	1 cut(s)	319
BspTNI	GGTCTC	3 cut(s)	161, 215, 298
BsrDI	GCAATG	2 cut(s)	624, 857
BsrGI	TGTACA	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	423, 504
BssECI	CCNNGG	3 cut(s)	288, 325, 1228
BssMI	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
BssNAI	GTATAC	1 cut(s)	811
BssT1I	CCWWGG	3 cut(s)	288, 325, 1228
Bst1107I	GTATAC	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	366, 979, 1123
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	319
BstDEI	CTNAG	6 cut(s)	109, 214, 279, 659, 720, 1219
BstDSI	CCRYGG	2 cut(s)	325, 1228
BstF5I	GGATG	2 cut(s)	607, 1189
BstKTI	GATC	7 cut(s)	223, 313, 358, 403, 457, 466, 1084
BstMAI	GTCTC	5 cut(s)	49, 161, 215, 298, 968
BstMBI	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
BstSNI	TACGTA	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	732, 820
BstV2I	GAAGAC	2 cut(s)	15, 690
BstX2I	RGATCY	4 cut(s)	310, 400, 454, 463
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	4 cut(s)	310, 400, 454, 463
BstZ17I	GTATAC	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	1036
BtgI	CCRYGG	2 cut(s)	325, 1228
BtsCI	GGATG	2 cut(s)	607, 1189
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	3 cut(s)	351, 717, 869
CaiI	CAGNNNCTG	2 cut(s)	131, 150
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	564, 958, 1151
CviAII	CATG	5 cut(s)	326, 740, 907, 989, 1229
CviQI	GTAC	3 cut(s)	564, 958, 1151
DdeI	CTNAG	6 cut(s)	109, 214, 279, 659, 720, 1219
DpnI	GATC	7 cut(s)	222, 312, 357, 402, 456, 465, 1083
DpnII	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	262, 1077
Eco105I	TACGTA	1 cut(s)	241
Eco130I	CCWWGG	3 cut(s)	288, 325, 1228
Eco24I	GRGCYC	2 cut(s)	264, 1079
Eco31I	GGTCTC	3 cut(s)	161, 215, 298
Eco47I	GGWCC	1 cut(s)	1021
Eco53kI	GAGCTC	2 cut(s)	262, 1077
Eco57I	CTGAAG	4 cut(s)	9, 108, 638, 750
EcoICRI	GAGCTC	2 cut(s)	262, 1077
EcoO109I	RGGNCCY	1 cut(s)	1021
EcoRI	GAATTC	1 cut(s)	1155
EcoT14I	CCWWGG	3 cut(s)	288, 325, 1228
EcoT22I	ATGCAT	1 cut(s)	1012
EcoT38I	GRGCYC	2 cut(s)	264, 1079
ErhI	CCWWGG	3 cut(s)	288, 325, 1228
FaeI	CATG	5 cut(s)	329, 743, 910, 992, 1232
FaqI	GGGAC	2 cut(s)	781, 1007
FatI	CATG	5 cut(s)	325, 739, 906, 988, 1228
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	746, 834
FokI	GGATG	2 cut(s)	614, 1196
FriOI	GRGCYC	2 cut(s)	264, 1079
Fsp4HI	GCNGC	2 cut(s)	746, 834
FspBI	CTAG	1 cut(s)	917
GluI	GCNGC	2 cut(s)	746, 834
GsuI	CTGGAG	3 cut(s)	149, 425, 782
HaeIII	GGCC	1 cut(s)	1036
Hin1II	CATG	5 cut(s)	329, 743, 910, 992, 1232
HinfI	GANTC	2 cut(s)	128, 1165
HphI	GGTGA	1 cut(s)	1244
Hpy166II	GTNNAC	2 cut(s)	566, 811
Hpy188III	TCNNGA	9 cut(s)	166, 224, 404, 740, 761, 827, 942, 1072, 1127
Hpy8I	GTNNAC	2 cut(s)	566, 811
HpyAV	CCTTC	3 cut(s)	30, 132, 613
HpyCH4III	ACNGT	3 cut(s)	366, 979, 1123
HpyCH4IV	ACGT	2 cut(s)	240, 247
HpyF3I	CTNAG	6 cut(s)	109, 214, 279, 659, 720, 1219
HpySE526I	ACGT	2 cut(s)	240, 247
Hsp92II	CATG	5 cut(s)	329, 743, 910, 992, 1232
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	732, 820
LweI	GCATC	7 cut(s)	94, 592, 703, 820, 997, 1174, 1225
MaeI	CTAG	1 cut(s)	917
MaeII	ACGT	2 cut(s)	240, 247
MaeIII	GTNAC	3 cut(s)	607, 654, 871
MalI	GATC	7 cut(s)	222, 312, 357, 402, 456, 465, 1083
MboI	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
MboII	GAAGA	9 cut(s)	15, 17, 20, 86, 344, 404, 535, 695, 846
MflI	RGATCY	4 cut(s)	310, 400, 454, 463
MhlI	GDGCHC	4 cut(s)	264, 287, 1079, 1220
MlsI	TGGCCA	1 cut(s)	1036
MluNI	TGGCCA	1 cut(s)	1036
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	4 cut(s)	441, 660, 688, 976
Mox20I	TGGCCA	1 cut(s)	1036
Mph1103I	ATGCAT	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	1036
MseI	TTAA	7 cut(s)	42, 140, 339, 570, 779, 1043, 1106
MslI	CAYNNNNRTG	4 cut(s)	444, 571, 862, 1233
Msp20I	TGGCCA	1 cut(s)	1036
Mva1269I	GAATGC	3 cut(s)	200, 484, 1010
NcoI	CCATGG	2 cut(s)	325, 1228
NdeII	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
NlaIII	CATG	5 cut(s)	329, 743, 910, 992, 1232
NlaIV	GGNNCC	2 cut(s)	465, 1023
NmuCI	GTSAC	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	1012
NspV	TTCGAA	1 cut(s)	319
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	3 cut(s)	200, 484, 1010
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	747, 835
PleI	GAGTC	1 cut(s)	1159
PpsI	GAGTC	1 cut(s)	1159
Ppu21I	YACGTR	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	1021
Psp124BI	GAGCTC	2 cut(s)	264, 1079
Psp5II	RGGWCCY	1 cut(s)	1021
PspN4I	GGNNCC	2 cut(s)	465, 1023
PspPI	GGNCC	1 cut(s)	1021
PspPPI	RGGWCCY	1 cut(s)	1021
PstNI	CAGNNNCTG	2 cut(s)	131, 150
PsuI	RGATCY	4 cut(s)	310, 400, 454, 463
RsaI	GTAC	3 cut(s)	565, 959, 1152
RsaNI	GTAC	3 cut(s)	564, 958, 1151
RseI	CAYNNNNRTG	4 cut(s)	444, 571, 862, 1233
SacI	GAGCTC	2 cut(s)	264, 1079
SaqAI	TTAA	7 cut(s)	42, 140, 339, 570, 779, 1043, 1106
SatI	GCNGC	2 cut(s)	746, 834
Sau3AI	GATC	7 cut(s)	220, 310, 355, 400, 454, 463, 1081
Sau96I	GGNCC	1 cut(s)	1021
ScaI	AGTACT	1 cut(s)	959
SchI	GAGTC	1 cut(s)	1159
SduI	GDGCHC	4 cut(s)	264, 287, 1079, 1220
SfaNI	GCATC	7 cut(s)	94, 592, 703, 820, 997, 1174, 1225
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	4 cut(s)	444, 571, 862, 1233
SmlI	CTYRAG	2 cut(s)	1026, 1070
SmoI	CTYRAG	2 cut(s)	1026, 1070
SnaBI	TACGTA	1 cut(s)	241
SpeI	ACTAGT	1 cut(s)	916
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	917
SstI	GAGCTC	2 cut(s)	264, 1079
StyI	CCWWGG	3 cut(s)	288, 325, 1228
TaaI	ACNGT	3 cut(s)	366, 979, 1123
TaiI	ACGT	2 cut(s)	243, 250
TaqI	TCGA	5 cut(s)	36, 84, 319, 343, 1172
TatI	WGTACW	2 cut(s)	563, 957
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	7 cut(s)	42, 140, 339, 570, 779, 1043, 1106
Tru9I	TTAA	7 cut(s)	42, 140, 339, 570, 779, 1043, 1106
TscAI	CASTG	3 cut(s)	358, 724, 869
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	2 cut(s)	745, 833
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	5 cut(s)	366, 485, 846, 945, 1003
TspRI	CASTG	3 cut(s)	358, 724, 869
VpaK11BI	GGWCC	1 cut(s)	1021
XapI	RAATTY	4 cut(s)	227, 1098, 1138, 1155
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	1 cut(s)	917
ZrmI	AGTACT	1 cut(s)	959
Zsp2I	ATGCAT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.