Rh4CG232900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002415
Physical Location & Seq
Reverse (-)
47259716 .. 47260878
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG232900.1

Sequence Viewer

Length: 366 bp
ATGGAAGACCCAATTCCTTGTTCATCAGCCCCTCTTGACCTCACCACCTCTCACAGACGAGTGCTTGACCTAGAAGAGATTCTCGAGCGATGCGGCTGGGACGATGATTTCGAATCACCTATTGCAGATTCTTATGATTTACTTAACGACAGAGCTGTATTTCTTGGTGTTGAAAAGGTAGTATCTGATTGCTCTGACGTTGGTCTGTTAGGGAATCAAGATTTTGAAGCATATATGGGACGTTTTGAGCTGGAGCTTAGCTCCATGGAGGCCAAGAATGCTAAGGAAGGTGAAGATTTTAATCGGCTCAATGTTGATATTGGGCAGTTGAAATGTTCATTGGATTCTGTTGGATTGCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.51

Weight (kDa)

4.14

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AgsI TTSAA 3 cut(s) 173, 227, 331
AjuI GAANNNNNNNTTGG 3 cut(s) 36, 323, 355
AluBI AGCT 4 cut(s) 155, 250, 256, 261
AluI AGCT 4 cut(s) 155, 250, 256, 261
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 3 cut(s) 34, 108, 302
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 12
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 83
BmsI GCATC 1 cut(s) 80
BoxI GACNNNNGTC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 113, 252
BsmFI GGGAC 2 cut(s) 113, 252
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 272
BspT104I TTCGAA 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 257, 282
BstDSI CCRYGG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 103
CviAII CATG 1 cut(s) 265
CviJI RGCY 8 cut(s) 29, 96, 155, 250, 256, 261, 272, 307
CviKI_1 RGCY 8 cut(s) 29, 96, 155, 250, 256, 261, 272, 307
DdeI CTNAG 2 cut(s) 257, 282
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 135, 232, 234, 236, 266
FaqI GGGAC 2 cut(s) 113, 252
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 1 cut(s) 268
HinfI GANTC 5 cut(s) 79, 113, 128, 214, 344
HphI GGTGA 3 cut(s) 34, 108, 302
Hpy188I TCNGA 2 cut(s) 187, 196
Hpy188III TCNNGA 3 cut(s) 35, 83, 218
HpyAV CCTTC 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 198, 241
HpyCH4V TGCA 2 cut(s) 125, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 257, 282
HpySE526I ACGT 2 cut(s) 198, 241
Hsp92II CATG 1 cut(s) 268
LmnI GCTCC 2 cut(s) 253, 266
LpnPI CCDG 2 cut(s) 82, 236
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 71
MaeII ACGT 2 cut(s) 198, 241
MboII GAAGA 3 cut(s) 17, 86, 305
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 42, 50, 58, 262
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 144, 300
Mva1269I GAATGC 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 264
NlaIII CATG 1 cut(s) 268
NspV TTCGAA 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 5 cut(s) 79, 113, 128, 214, 344
PkrI GCNGC 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 144, 300
SatI GCNGC 1 cut(s) 94
SfaNI GCATC 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 2 cut(s) 201, 244
TaqI TCGA 2 cut(s) 84, 111
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 5 cut(s) 79, 113, 128, 214, 344
Tru1I TTAA 2 cut(s) 144, 300
Tru9I TTAA 2 cut(s) 144, 300
TspDTI ATGAA 2 cut(s) 12, 327
XhoI CTCGAG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.