Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Reverse (-)

35959831 .. 35960987

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGACCCAGTTCCTTCTTCATCAGCCCCACCCGACCTCACAACCATTCACAGACGAGTGCTTGAGCTCGAAGAGATTCTCGAGCGATGCCGCCGAGACGATGATTCCGAATCACCTACTGCAGATTCTCAGGATTTACTTCACGAGTGCGCACTGTTTCTCCGGAGTAGAGTTGAAAAGATAGTATCTGATTGCTCTGATGTTGGTCTGTTGGGGAATCAAGATTTTGAAGCATATATGGGACGTTTTGAGCTGGAGCTTAGCTCCGTGGAGGCCGAGAGCGCTAAGGTTTCCGATGAAATTGAGGGTCTTGTTCGAACCCATGAGGAAGAGTTTAATCGGGTCAATGTTGATATTGGGCAGTTGAAATGTTCATTGGATTTTGTTGGATCGCAGGATTTCCACATGAAGCGCAATCTTATAGATGGGTGGTTTTCTGTGCTCATGTCCCTGAAATGGGTAGAAACACTCAGCATTACTGCTGGATATGTTCACTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

4.54

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	400
AfeI	AGCGCT	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	459, 460
AgsI	TTSAA	3 cut(s)	179, 233, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	4 cut(s)	70, 256, 262, 267
AluI	AGCT	4 cut(s)	70, 256, 262, 267
Alw21I	GWGCWC	2 cut(s)	72, 447
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	155, 287, 417
AsuHPI	GGTGA	1 cut(s)	108
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	72, 447
BccI	CCATC	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 460
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	459, 460
BseMII	CTCAG	2 cut(s)	146, 487
BseNI	ACTGG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	72, 447
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	258, 436
BslI	CCNNNNNNNGG	2 cut(s)	459, 460
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	258, 436
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	72, 447
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	392
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	145, 486
BspEI	TCCGGA	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	392
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	69, 327
BstBI	TTCGAA	1 cut(s)	319
BstDEI	CTNAG	4 cut(s)	132, 263, 288, 473
BstDSI	CCRYGG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	155, 287, 417
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	155
CfoI	GCGC	3 cut(s)	155, 287, 417
CviAII	CATG	3 cut(s)	326, 409, 448
CviJI	RGCY	6 cut(s)	29, 70, 256, 262, 267, 278
CviKI_1	RGCY	6 cut(s)	29, 70, 256, 262, 267, 278
DdeI	CTNAG	4 cut(s)	132, 263, 288, 473
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	69, 327
EarI	CTCTTC	2 cut(s)	69, 327
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	3 cut(s)	329, 412, 451
FaiI	YATR	8 cut(s)	238, 240, 242, 327, 410, 425, 449, 492
FaqI	GGGAC	2 cut(s)	258, 436
FatI	CATG	3 cut(s)	325, 408, 447
Fnu4HI	GCNGC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	94
FspAI	RTGCGCAY	1 cut(s)	154
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	3 cut(s)	154, 286, 416
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	3 cut(s)	155, 287, 417
Hin1II	CATG	3 cut(s)	329, 412, 451
Hin6I	GCGC	3 cut(s)	153, 285, 415
HinP1I	GCGC	3 cut(s)	153, 285, 415
HinfI	GANTC	5 cut(s)	79, 107, 113, 128, 220
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	112, 193, 202, 298
Hpy188III	TCNNGA	5 cut(s)	83, 134, 146, 166, 224
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	132, 263, 288, 473
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	329, 412, 451
HspAI	GCGC	3 cut(s)	153, 285, 415
Kpn2I	TCCGGA	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	259, 272
LpnPI	CCDG	7 cut(s)	24, 119, 179, 242, 383, 467, 471
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	247
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	4 cut(s)	12, 17, 86, 344
MhlI	GDGCHC	2 cut(s)	72, 447
MluCI	AATT	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	50, 268, 301, 322
MroI	TCCGGA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	339, 505
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	3 cut(s)	329, 412, 451
NmeAIII	GCCGAG	2 cut(s)	122, 304
NsbI	TGCGCA	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	79, 107, 113, 128, 220
PkrI	GCNGC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	339, 505
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	72, 447
SetI	ASST	8 cut(s)	42, 72, 121, 250, 258, 264, 269, 294
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	65, 83
SmoI	CTYRAG	2 cut(s)	65, 83
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	72, 84, 319
TasI	AATT	1 cut(s)	303
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	5 cut(s)	79, 107, 113, 128, 220
Tru1I	TTAA	2 cut(s)	339, 505
Tru9I	TTAA	2 cut(s)	339, 505
TscAI	CASTG	1 cut(s)	162
TspDTI	ATGAA	5 cut(s)	12, 315, 366, 425, 491
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.