Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003264.1

Orthogroup ID

OG0002415

Physical Location & Seq

Genomic Coordinates Forward (+)

88995 .. 89656

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003264.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggaagacccagttccttcttcatcagccccacccgacctcacaaccattcacagacgagtgcttgagctcgaagagattctcgagcgatgccgccgagacgatgattccgaatcacctactgcagattctcaggatttacttcacgagtgcgctgtgtttctccggagtagagttgaaaagatagtatctgattgctctgatgttggtctgttgggggatcaagattttgaagcatatatgggacgttttgagcaggagcttagctccgtggaggccgagagcgctaaggtttccgatgaaattgagggtcttgttcgaacccatgaggaaggtgagggtactatctttgtctggcatgctactgcacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

4.3

Isoelectric Point (pI)

76.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23910 AT3G23910 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255 AT3G24255
fragaria_vesca	FvH4_4g13460 FvH4_4g13460
malus_domestica	MD04G1014100.v1.1
prunus_persica	Prupe.1G161100_v2.0.a1 Prupe.1G161100_v2.0.a1
pyrus_communis	pycom04g01090
rosa_chinensis	RchiOBHm_Chr4g0414021 RchiOBHm_Chr4g0414071 RchiOBHm_Chr4g0419401
rosa_laevigata	RLG00000008182 RLG00000008184
rosa_multiflora	Rmu_sc0000455.1_g000037 Rmu_sc0003264.1_g000019 Rmu_sc0003264.1_g000021 Rmu_sc0006428.1_g000007
rosa_roxburghii	Rroxscaffold_5G00357940 Rroxscaffold_5G00357960
rosa_rugosa	Rorug04G0125100
rosa_samantha	Rh2DG359600 Rh4AG183600 Rh4BG183100 Rh4BG221900 Rh4CG195600 Rh4CG232900 Rh4DG178900 Rh4DG179100 Rh5BG357800 Rh5DG373300
rosa_wichuraiana	Rw4G015610 Rw4G015630 Rw4G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	343
AfeI	AGCGCT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	179, 233
AluBI	AGCT	3 cut(s)	70, 262, 267
AluI	AGCT	3 cut(s)	70, 262, 267
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	155, 287
AsuHPI	GGTGA	2 cut(s)	108, 347
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bpu10I	CCTNAGC	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	132, 263, 288
BstDSI	CCRYGG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	155, 287
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	2 cut(s)	155, 287
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	326, 359
CviJI	RGCY	5 cut(s)	29, 70, 262, 267, 278
CviKI_1	RGCY	5 cut(s)	29, 70, 262, 267, 278
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	132, 263, 288
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	329, 362
FaiI	YATR	5 cut(s)	238, 240, 242, 327, 360
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	2 cut(s)	325, 358
Fnu4HI	GCNGC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	94
GlaI	GCGC	2 cut(s)	154, 286
GluI	GCNGC	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	2 cut(s)	155, 287
Hin1II	CATG	2 cut(s)	329, 362
Hin6I	GCGC	2 cut(s)	153, 285
HinP1I	GCGC	2 cut(s)	153, 285
HinfI	GANTC	4 cut(s)	79, 107, 113, 128
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	108, 347
Hpy188I	TCNGA	4 cut(s)	112, 193, 202, 298
Hpy188III	TCNNGA	5 cut(s)	83, 134, 146, 166, 224
HpyAV	CCTTC	2 cut(s)	27, 326
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	125, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	132, 263, 288
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	329, 362
HspAI	GCGC	2 cut(s)	153, 285
Kpn2I	TCCGGA	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	259, 272
LpnPI	CCDG	5 cut(s)	24, 119, 179, 242, 340
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	247
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	12, 17, 86
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	5 cut(s)	50, 268, 301, 322, 331
MroI	TCCGGA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	78
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	329, 362
NmeAIII	GCCGAG	2 cut(s)	122, 304
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	79, 107, 113, 128
PkrI	GCNGC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	8 cut(s)	42, 72, 121, 250, 264, 269, 294, 337
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	65, 83
SmoI	CTYRAG	2 cut(s)	65, 83
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	72, 84, 319
TasI	AATT	1 cut(s)	303
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	79, 107, 113, 128
TspDTI	ATGAA	2 cut(s)	12, 315
TspGWI	ACGGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.