RLG00000008182

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002415
Physical Location & Seq
Forward (+)
26691600 .. 26693291
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008182

Sequence Viewer

Length: 516 bp
ATGGAAGACCCAGTTCCTTCTTCATCAGCCCCACCCGACCTCACAACCATTCACAGACGAGTGCTTGAGCTCGAAGAGATTCTCGAGCGATGCCGCCGAGACAATGATTCCGAATCACCTACTGCAGATTCTCAGGATTTACTTAACGACTGCGCTGTGTTTCTCCGGAGTAGAGTTGAAAAGATAGTATCTGATTGCTCTGATGTTGGTCTGTTAGGGGACCAAGATTTTGAAGCATATATGGGACCGTTTGAGCAGGAGCTTAGCTCCGTGGAGGCCGAGAGCGCCAAGGTTTCCGATGAAATTGAGGGTCTAGTTCGAATCCATGAGGAAGATTTTAATCGGCTCAATGTTGAAATTGGGCAGTTGAAATGTTCATTGGATTTTGTTGGATCGCAGTGCAGGACAGAATTGTCAAGCACACCAAACAACCAGCAGAACAACAAACCCAGACCATCTTCTAGTTCTAAAGAAAGAACAAGCAAGCAAGCAGTAATTAGCCGATGGAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.24

Weight (kDa)

4.59

Isoelectric Point (pI)

72.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 400
AgsI TTSAA 4 cut(s) 179, 233, 356, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 70, 262, 267
AluI AGCT 3 cut(s) 70, 262, 267
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 2 cut(s) 155, 287
AspS9I GGNCC 2 cut(s) 220, 245
AsuHPI GGTGA 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 220, 245
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 463, 498
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 314, 462
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 95
Bme18I GGWCC 2 cut(s) 220, 245
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 220, 245
BmiI GGNNCC 2 cut(s) 221, 246
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 251, 283
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 270, 288
BsaWI WCCGGW 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 270, 288
BseJI GATNNNNATC 1 cut(s) 339
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 2 cut(s) 233, 258
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 233, 258
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 1 cut(s) 392
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 145
BspEI TCCGGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 221, 246
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 270, 288
BssMI GATC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 485, 489
BstDEI CTNAG 2 cut(s) 132, 263
BstDSI CCRYGG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 155, 287
BstKTI GATC 1 cut(s) 395
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 392
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 485, 489
CfoI GCGC 2 cut(s) 155, 287
Cfr13I GGNCC 2 cut(s) 220, 245
CviAII CATG 1 cut(s) 326
CviJI RGCY 7 cut(s) 29, 70, 262, 267, 278, 346, 501
CviKI_1 RGCY 7 cut(s) 29, 70, 262, 267, 278, 346, 501
DdeI CTNAG 2 cut(s) 132, 263
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 220, 245
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 329
FaiI YATR 4 cut(s) 238, 240, 242, 327
FaqI GGGAC 2 cut(s) 233, 258
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 2 cut(s) 314, 462
GlaI GCGC 2 cut(s) 154, 286
GluI GCNGC 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 166
HhaI GCGC 2 cut(s) 155, 287
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 2 cut(s) 153, 285
HinP1I GCGC 2 cut(s) 153, 285
HinfI GANTC 5 cut(s) 79, 107, 113, 128, 321
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 108
Hpy188I TCNGA 4 cut(s) 112, 193, 202, 298
Hpy188III TCNNGA 3 cut(s) 83, 134, 166
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 125, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 132, 263
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 2 cut(s) 153, 285
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 1 cut(s) 392
LmnI GCTCC 2 cut(s) 259, 272
LpnPI CCDG 7 cut(s) 24, 119, 179, 242, 388, 446, 463
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 314, 462
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 5 cut(s) 12, 17, 86, 344, 450
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 303, 357, 410, 495
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 4 cut(s) 50, 268, 301, 322
MroI TCCGGA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 144, 339
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 1 cut(s) 392
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 2 cut(s) 221, 246
NmeAIII GCCGAG 2 cut(s) 122, 304
NspV TTCGAA 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 5 cut(s) 79, 107, 113, 128, 321
PkrI GCNGC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 221, 246
PspPI GGNCC 2 cut(s) 220, 245
PstI CTGCAG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 144, 339
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 392
Sau96I GGNCC 2 cut(s) 220, 245
SduI GDGCHC 1 cut(s) 72
SetI ASST 6 cut(s) 42, 72, 121, 264, 269, 294
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 319
SinI GGWCC 2 cut(s) 220, 245
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 65, 83
SmoI CTYRAG 2 cut(s) 65, 83
Sse9I AATT 4 cut(s) 303, 357, 410, 495
SsiI CCGC 1 cut(s) 94
SspMI CTAG 2 cut(s) 314, 462
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 72, 84, 319
TasI AATT 4 cut(s) 303, 357, 410, 495
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 5 cut(s) 79, 107, 113, 128, 321
Tru1I TTAA 2 cut(s) 144, 339
Tru9I TTAA 2 cut(s) 144, 339
TscAI CASTG 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 12, 315, 366
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 220, 245
XhoI CTCGAG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 314, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.