Rh4BG221900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002415
Physical Location & Seq
Reverse (-)
38300898 .. 38302057
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG221900.1

Sequence Viewer

Length: 330 bp
ATGGAAGACCCAATTACTTCTTCATCAGCCCCTCTTGACCTCACCACCTTTCACAGACGAGTGCTTGACCTAGAAGAGATTCTCGAGCGATGCGGCTGGGACGATGATTTCGAATCACCTATTGCAGATTCGCATGATTTACTTAACGACAGAGCTGTATTTCTTCGGAGTAGAGTTGAAAAGGTAGTATCTGACTGCTCTGACGTTGGTCTGTTAGGGGATCAAGATTTTGAAGCATATATGGGACGTTTTGAGCAGGAGCTTAGCTCCATGGAGGCCGAGAATGCTAAGTTGAAATGTTCATTGGATTCTGTTGGATTGCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

4.27

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 228
AgsI TTSAA 3 cut(s) 179, 233, 295
AjuI GAANNNNNNNTTGG 3 cut(s) 36, 287, 319
AluBI AGCT 3 cut(s) 155, 262, 267
AluI AGCT 3 cut(s) 155, 262, 267
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 34, 108
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 12
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 83
BmsI GCATC 1 cut(s) 80
BoxI GACNNNNGTC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 251, 283
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 113, 258
BsmFI GGGAC 2 cut(s) 113, 258
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 263
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 278
BspPI GGATC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 263, 288
BstDSI CCRYGG 1 cut(s) 270
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstPAI GACNNNNGTC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 103
CviAII CATG 2 cut(s) 134, 271
CviJI RGCY 6 cut(s) 29, 96, 155, 262, 267, 278
CviKI_1 RGCY 6 cut(s) 29, 96, 155, 262, 267, 278
DdeI CTNAG 2 cut(s) 263, 288
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 137, 274
FaiI YATR 5 cut(s) 135, 238, 240, 242, 272
FaqI GGGAC 2 cut(s) 113, 258
FatI CATG 2 cut(s) 133, 270
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 278
Hin1II CATG 2 cut(s) 137, 274
HinfI GANTC 4 cut(s) 79, 113, 128, 308
HphI GGTGA 2 cut(s) 34, 108
Hpy188I TCNGA 3 cut(s) 168, 193, 202
Hpy188III TCNNGA 3 cut(s) 35, 83, 224
HpyCH4IV ACGT 2 cut(s) 204, 247
HpyCH4V TGCA 2 cut(s) 125, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 263, 288
HpySE526I ACGT 2 cut(s) 204, 247
Hsp92II CATG 2 cut(s) 137, 274
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 259, 272
LpnPI CCDG 2 cut(s) 82, 242
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 71
MaeII ACGT 2 cut(s) 204, 247
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 4 cut(s) 12, 17, 86, 155
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 3 cut(s) 42, 50, 268
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 137, 274
NmeAIII GCCGAG 1 cut(s) 304
NspV TTCGAA 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 79, 113, 128, 308
PkrI GCNGC 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 220
SfaNI GCATC 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 270
TaiI ACGT 2 cut(s) 207, 250
TaqI TCGA 2 cut(s) 84, 111
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 4 cut(s) 79, 113, 128, 308
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 12, 291
XhoI CTCGAG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.