Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

8910422 .. 8912223

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGTGACAGCGAAGATGAAACAGGATACCCAAAAAAGTTTTACTCTTTGAATCGGCAAAACCATCCAATGTATAGTAGACCAATACCTAAGCGTCACGCGTATTACAATGAAGAAGAAGACGAAGATGAAGTCGAAGGAGAAGAGGAAGATCCACAAGGAGGATACATTCGTGGAAATGAGAGGTTTCAGAAGAGACAGAAACCAAACAAAGTAGTTTCTGGGTTTGAATTTGCTGGTCCTAGTGATGCTAAAGTTGCGTATGATTGGAGAGAGCAAGAAGCTTTTGTGTTGCTTGAAGTTTGGGGAGATAGGTTTTTGCAATTGGGTAGAAGGAGTTTGAGGAACGAGGATTGGAATGAAGTAGCTGAGAAAGTGAGTGAGGAGCTAAGGATGGAGAAATCTGAGACGCAATGTAGGAGAATGATTGATGACTTGAAGAGGAAGTATAGAAAAGAGAAGATTAAGGTTGAGAAATCAGGTTTAGGTTCAAGTAAATGGTCGTTTTTCAATAAGTTGGATATGTTGCTTTGTGTTTCGCCCAAGTCGGATTTAGGTTTAGCTTGTGGTGTTGATTCAGGTGAGTTTGTGTTTATGAACACTAAGGTTTATTTAGATAAGTCTAATGGGTTTGATGAGATGATGGATAGTCCTGGTGATTCTGAAGAGGAGGAGGATGAGGATGATGAGGTTGAGTACGAGAGGAAGAAGGTTAATGACGCTGCTTCGTATAAGATGTTGGCGGATTCTGTTGAGAGGTTTGGGAAGGTTTATGAGAAGATGGAGAAGAGTAAGAAAGAGCAAATGAAGGAGTTGGAGAAGATGAGAGCTGATTTTCAGAGAGATTTGGAGTTGCAGAAGAAGCAGATTGTTGATAGAGCTCAGAGTGAGATTGCTAGGTTACGTGAAGAGGAGGAGAATCATCATGGTGGTGGTGATGATGATGAGAGTGAAGATGAAGAAATGGAGAATGATTCTGATGTTAATCTCAGTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

333

Amino Acids

39.08

Weight (kDa)

4.66

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	89 - 176	2.5e-18	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	111 - 174	6.7e-07	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	79
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	743
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	6 cut(s)	52, 230, 299, 439, 492, 511
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	6 cut(s)	284, 368, 388, 563, 830, 881
AluI	AGCT	6 cut(s)	284, 368, 388, 563, 830, 881
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	2 cut(s)	190, 401
AlwI	GGATC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	17, 593, 668, 947
AvaII	GGWCC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanII	GRGCYC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	4 cut(s)	72, 388, 637, 775
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	2 cut(s)	20, 158
BcoDI	GTCTC	2 cut(s)	190, 401
BfaI	CTAG	2 cut(s)	243, 897
BfuI	GTATCC	2 cut(s)	20, 158
BisI	GCNGC	1 cut(s)	723
BlsI	GCNGC	1 cut(s)	724
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	2 cut(s)	90, 389
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	1 cut(s)	654
BseGI	GGATG	4 cut(s)	64, 399, 682, 688
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	3 cut(s)	360, 396, 896
BseRI	GAGGAG	5 cut(s)	398, 683, 686, 926, 929
BseXI	GCAGC	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	883
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	190, 401
BsmBI	CGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	743
BspCNI	CTCAG	4 cut(s)	361, 397, 895, 1002
BspFNI	CGCG	1 cut(s)	101
BspPI	GGATC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	419
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	654
Bst6I	CTCTTC	6 cut(s)	138, 188, 434, 660, 782, 903
BstBAI	YACGTR	1 cut(s)	905
BstDEI	CTNAG	7 cut(s)	90, 369, 389, 405, 603, 882, 989
BstF5I	GGATG	4 cut(s)	64, 399, 682, 688
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	2 cut(s)	190, 401
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 862
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	652
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	2 cut(s)	20, 158
BtsCI	GGATG	4 cut(s)	64, 399, 682, 688
BtsIMutI	CAGTG	1 cut(s)	997
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	3 cut(s)	83, 418, 728
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	1 cut(s)	926
CviJI	RGCY	6 cut(s)	284, 368, 388, 563, 830, 881
CviKI_1	RGCY	6 cut(s)	284, 368, 388, 563, 830, 881
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	7 cut(s)	90, 369, 389, 405, 603, 882, 989
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	6 cut(s)	138, 188, 434, 660, 782, 903
EarI	CTCTTC	6 cut(s)	138, 188, 434, 660, 782, 903
EciI	GGCGGA	1 cut(s)	758
Ecl136II	GAGCTC	1 cut(s)	881
Eco24I	GRGCYC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	881
Eco57I	CTGAAG	1 cut(s)	684
EcoICRI	GAGCTC	1 cut(s)	881
EcoRII	CCWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	883
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	1 cut(s)	929
FaiI	YATR	8 cut(s)	75, 264, 450, 524, 596, 732, 774, 927
FatI	CATG	1 cut(s)	925
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	723
FokI	GGATG	4 cut(s)	51, 406, 689, 695
FriOI	GRGCYC	1 cut(s)	883
Fsp4HI	GCNGC	1 cut(s)	723
FspBI	CTAG	2 cut(s)	243, 897
GluI	GCNGC	1 cut(s)	723
HgaI	GACGC	3 cut(s)	83, 418, 728
Hin1II	CATG	1 cut(s)	929
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	6 cut(s)	52, 575, 659, 746, 919, 974
HphI	GGTGA	4 cut(s)	17, 593, 668, 947
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	7 cut(s)	192, 406, 550, 664, 840, 885, 979
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	5 cut(s)	131, 327, 703, 760, 802
HpyCH4IV	ACGT	1 cut(s)	904
HpyCH4V	TGCA	2 cut(s)	322, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 862
HpyF3I	CTNAG	7 cut(s)	90, 369, 389, 405, 603, 882, 989
HpySE526I	ACGT	1 cut(s)	904
Hsp92II	CATG	1 cut(s)	929
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	7 cut(s)	9, 207, 222, 465, 564, 639, 666
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	243, 897
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	3 cut(s)	5, 95, 900
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	2 cut(s)	230, 323
MluI	ACGCGT	1 cut(s)	99
MmeI	TCCRAC	3 cut(s)	498, 528, 795
MseI	TTAA	3 cut(s)	465, 714, 984
MslI	CAYNNNNRTG	2 cut(s)	927, 930
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	257, 862
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	929
NmuCI	GTSAC	2 cut(s)	5, 95
PfeI	GAWTC	6 cut(s)	52, 575, 659, 746, 919, 974
PkrI	GCNGC	1 cut(s)	724
Ppu21I	YACGTR	1 cut(s)	905
Psp124BI	GAGCTC	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	927, 930
SacI	GAGCTC	1 cut(s)	883
SaqAI	TTAA	3 cut(s)	465, 714, 984
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	927, 930
Sse9I	AATT	2 cut(s)	230, 323
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	243, 897
SstI	GAGCTC	1 cut(s)	883
StyD4I	CCNGG	1 cut(s)	652
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	230, 323
TfiI	GAWTC	6 cut(s)	52, 575, 659, 746, 919, 974
Tru1I	TTAA	3 cut(s)	465, 714, 984
Tru9I	TTAA	3 cut(s)	465, 714, 984
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	2 cut(s)	5, 95
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	2 cut(s)	5, 95
TspDTI	ATGAA	7 cut(s)	33, 126, 144, 375, 611, 821, 972
TspRI	CASTG	1 cut(s)	997
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	2 cut(s)	243, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.